RNA 3D Hub //

Motif HL_39454.2 Version HL_39454.2 of this group appears in releases 3.94 to 3.94

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 61-62-53-4
1 HL_6WZR_0016WZR0.40952AZMP/ZTP riboswitchG28A29A30A33A34C35cWW
2 HL_5BTP_0035BTP0.39972BZMP/ZTP riboswitchG28A29A30A33A34C35cWWncsS
3 HL_8SYK_0028SYK0.15122ARNA device 43 truncation mutant 3 (U100C)C32C33A34U37A38G39cWW
4 HL_2OEU_0022OEU0.00002AHammerhead RibozymeC25C26A27U30A31G32cWW
5 HL_9DFE_0249DFE0.789121A LSU rRNAC884C885C886C889A890G892cWWncSWntSH
6 HL_8P9A_1338P9A0.81513AR LSU rRNAG910C911G912A915A917C918cWWcWWtSW
7 HL_6CF2_0016CF20.85712GRNA (35-MER)A13C14U15G18G19U20cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAUUAAC2
CCAAAUAG2
CCCACCAG1
GCGAAAGAC1
ACUUCGGU1
Non-Watson-Crick part of the motif
SequenceCounts
AAUUAA2
CAAAUA2
CCACCA1
CGAAAGA1
CUUCGG1

Release history

Release3.94
Date2025-02-26
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
    • Basepair signature
    cWW-F-F-F-F
    Heat map statistics
    Min 0.08 | Avg 0.55 | Max 0.92
    Help

    Coloring options:

    HL_6WZR_001:HL_6WZR_001 = 0HL_6WZR_001:HL_5BTP_003 = 0.0808HL_6WZR_001:HL_8SYK_002 = 0.3978HL_6WZR_001:HL_2OEU_002 = 0.4095HL_6WZR_001:HL_9DFE_024 = 0.8486HL_6WZR_001:HL_8P9A_133 = 0.8962HL_6WZR_001:HL_6CF2_001 = 0.8952HL_5BTP_003:HL_6WZR_001 = 0.0808HL_5BTP_003:HL_5BTP_003 = 0HL_5BTP_003:HL_8SYK_002 = 0.3944HL_5BTP_003:HL_2OEU_002 = 0.3997HL_5BTP_003:HL_9DFE_024 = 0.8717HL_5BTP_003:HL_8P9A_133 = 0.913HL_5BTP_003:HL_6CF2_001 = 0.9178HL_8SYK_002:HL_6WZR_001 = 0.3978HL_8SYK_002:HL_5BTP_003 = 0.3944HL_8SYK_002:HL_8SYK_002 = 0HL_8SYK_002:HL_2OEU_002 = 0.1512HL_8SYK_002:HL_9DFE_024 = 0.7972HL_8SYK_002:HL_8P9A_133 = 0.8414HL_8SYK_002:HL_6CF2_001 = 0.8954HL_2OEU_002:HL_6WZR_001 = 0.4095HL_2OEU_002:HL_5BTP_003 = 0.3997HL_2OEU_002:HL_8SYK_002 = 0.1512HL_2OEU_002:HL_2OEU_002 = 0HL_2OEU_002:HL_9DFE_024 = 0.7891HL_2OEU_002:HL_8P9A_133 = 0.8151HL_2OEU_002:HL_6CF2_001 = 0.8571HL_9DFE_024:HL_6WZR_001 = 0.8486HL_9DFE_024:HL_5BTP_003 = 0.8717HL_9DFE_024:HL_8SYK_002 = 0.7972HL_9DFE_024:HL_2OEU_002 = 0.7891HL_9DFE_024:HL_9DFE_024 = 0HL_9DFE_024:HL_8P9A_133 = 0.5275HL_9DFE_024:HL_6CF2_001 = 0.5434HL_8P9A_133:HL_6WZR_001 = 0.8962HL_8P9A_133:HL_5BTP_003 = 0.913HL_8P9A_133:HL_8SYK_002 = 0.8414HL_8P9A_133:HL_2OEU_002 = 0.8151HL_8P9A_133:HL_9DFE_024 = 0.5275HL_8P9A_133:HL_8P9A_133 = 0HL_8P9A_133:HL_6CF2_001 = 0.243HL_6CF2_001:HL_6WZR_001 = 0.8952HL_6CF2_001:HL_5BTP_003 = 0.9178HL_6CF2_001:HL_8SYK_002 = 0.8954HL_6CF2_001:HL_2OEU_002 = 0.8571HL_6CF2_001:HL_9DFE_024 = 0.5434HL_6CF2_001:HL_8P9A_133 = 0.243HL_6CF2_001:HL_6CF2_001 = 0HL_6WZR_001HL_5BTP_003HL_8SYK_002HL_2OEU_002HL_9DFE_024HL_8P9A_133HL_6CF2_001Discrepancy0.000.200.400.600.80
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