Motif HL_39533.1 Version HL_39533.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-6 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6N5P_001 | 6N5P | 0.5306 | 1 | A | cyclic di-AMP riboswitch | A | 14 | U | 15 | G | 16 | U | 17 | G | 19 | U | 20 | U | 21 | U | 22 | cWW | cwW | |||
| 2 | HL_2D6F_004 | 2D6F | 0.0000 | 4 | F | tRNA | G | 912 | U | 913 | A | 914 | G | 915 | U | 916 | A | 921 | U | 922 | C | 923 | cWW | ncwW | ncWS | ||
| 3 | HL_5E6M_001 | 5E6M | 0.2338 | 3 | C | tRNA | G | 12 | U | 13 | A | 14 | G | 15 | U | 16 | A | 21 | U | 22 | C | 23 | cWW | cwW | cWS | ||
| 4 | HL_7A0S_009 | 7A0S | 0.6959 | 4 | X | LSU rRNA | A | 254 | A | 255 | C | 256 | G | 257 | C | 258 | G | 263 | U | 264 | U | 265 | ncWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGUCGUUU | 1 |
| GUAGUGGUAAUC | 1 |
| GUAGUGGUAUC | 1 |
| AACGCUUGCGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUCGUU | 1 |
| UAGUGGUAAU | 1 |
| UAGUGGUAU | 1 |
| ACGCUUGCGU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.23 | Avg 0.44 | Max 0.80
Coloring options: