Motif HL_39872.3 Version HL_39872.3 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_059 | 1VW3 | 0.4398 | 1 | A | 21S ribosomal RNA | U | 3135 | A | 3137 | U | 3138 | A | 3139 | C | 3140 | U | 3141 | A | 3142 | A | 3143 | cWW | cSW |
| 2 | HL_4IOA_067 | 4IOA | 0.4116 | 1 | X | LSU rRNA | G | 2794 | A | 2796 | G | 2797 | A | 2798 | C | 2799 | C | 2800 | A | 2801 | C | 2802 | cWW | cSW |
| 3 | HL_4NVV_066 | 4NVV | 0.3907 | 1 | A | 23S Ribosomal RNA | G | 2829 | A | 2831 | G | 2832 | A | 2833 | C | 2834 | C | 2835 | A | 2836 | C | 2837 | cWW | cSW |
| 4 | HL_2QBG_070 | 2QBG | 0.0000 | 1 | B | 23S rRNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | G | 2825 | A | 2826 | C | 2827 | cWW | cSW |
| 5 | HL_4A1B_070 | 4A1B | 0.1738 | 1 | 1 | 26S RRNA | G | 3263 | A | 3265 | G | 3266 | A | 3267 | C | 3268 | G | 3269 | A | 3270 | C | 3271 | cWW | cSW |
| 6 | HL_3U5H_071 | 3U5H | 0.2074 | 1 | 5 | 25S rRNA | G | 3303 | A | 3305 | U | 3306 | A | 3307 | C | 3308 | G | 3309 | A | 3310 | C | 3311 | cWW | cSW |
| 7 | HL_1S72_069 | 1S72 | 0.2850 | 1 | 0 | LSU rRNA | G | 2836 | A | 2838 | C | 2839 | A | 2840 | A | 2841 | G | 2842 | A | 2843 | C | 2844 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGACCAC | 2 |
| UUAUACUAA | 1 |
| GAAGACGAC | 1 |
| GUAGACGAC | 1 |
| GUAUACGAC | 1 |
| GUACAAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGACCA | 2 |
| UAUACUA | 1 |
| AAGACGA | 1 |
| UAGACGA | 1 |
| UAUACGA | 1 |
| UACAAGA | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_39872.3 | Only in the parent motif |
|---|---|---|---|
| HL_39872.2 Compare | HL_4A1B_070, HL_1S72_069, HL_2QBG_070, HL_4IOA_067, HL_3U5H_071 | HL_1VW3_059, HL_4NVV_066 | HL_3V2F_066 |
Children motifs
| Child motif | Common motif instances | Only in HL_39872.3 | Only in the child motif |
|---|---|---|---|
| HL_39872.4 Compare | HL_1S72_069, HL_2QBG_070, HL_4A1B_070, HL_4NVV_066, HL_4IOA_067, HL_3U5H_071 | HL_1VW3_059 | HL_4CUX_009, HL_4CUV_071 |
| HL_04979.1 Compare | HL_1VW3_059 | HL_1S72_069, HL_2QBG_070, HL_4A1B_070, HL_4NVV_066, HL_4IOA_067, HL_3U5H_071 |
- Annotations
-
- (7)
- Basepair signature
- cWW-cSW-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.29 | Max 0.48
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