HL_4IOA_067

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4IOA|1|X|A|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05018.3

Basepair signature

cWW-cSW-R-R-R-R

Number of instances in this motif group

6

Unit IDs

4IOA|1|X|G|2794
4IOA|1|X|A|2795
4IOA|1|X|A|2796
4IOA|1|X|G|2797
4IOA|1|X|A|2798
4IOA|1|X|C|2799
4IOA|1|X|C|2800
4IOA|1|X|A|2801
4IOA|1|X|C|2802

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19