Motif HL_39943.1 Version HL_39943.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 1-33 | 3-5 | 5-28 | 6-7 | 27-30 | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX2_024 | 1VX2 | 0 | 5 | 2 | 18S ribosomal RNA | G | 1280 | G | 1281 | A | 1282 | G | 1286 | A | 1287 | U | 1288 | U | 1289 | G | 1290 | A | 1291 | A | 1293 | G | 1294 | A | 1295 | U | 1296 | U | 1297 | G | 1298 | A | 1299 | A | 1301 | G | 1302 | C | 1303 | U | 1304 | C | 1305 | U | 1306 | U | 1307 | U | 1308 | C | 1309 | U | 1310 | C | 1311 | G | 1312 | A | 1313 | U | 1314 | U | 1315 | C | 1316 | C | 1317 | cWW | ncsS | ntHS | ncSH | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-R-tWW-cWH-R-tHS-R-R-R-R-R-R-R-R-R-R-tSH-R-R-R-R-R-R-R-cSH-cSS-R
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: