HL_1VX2_024

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCC

Length

38 nucleotides

Bulged bases

1VX2|1|2|C|1283, 1VX2|1|2|A|1284, 1VX2|1|2|G|1285, 1VX2|1|2|C|1292, 1VX2|1|2|A|1293, 1VX2|1|2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39943.1

Basepair signature

cWW-R-tWW-cWH-R-tHS-R-R-R-R-R-R-R-R-R-R-tSH-R-R-R-R-R-R-R-cSH-cSS-R

Number of instances in this motif group

1

Unit IDs

1VX2|1|2|G|1280
1VX2|1|2|G|1281
1VX2|1|2|A|1282
1VX2|1|2|C|1283
1VX2|1|2|A|1284
1VX2|1|2|G|1285
1VX2|1|2|G|1286
1VX2|1|2|A|1287
1VX2|1|2|U|1288
1VX2|1|2|U|1289
1VX2|1|2|G|1290
1VX2|1|2|A|1291
1VX2|1|2|C|1292
1VX2|1|2|A|1293
1VX2|1|2|G|1294
1VX2|1|2|A|1295
1VX2|1|2|U|1296
1VX2|1|2|U|1297
1VX2|1|2|G|1298
1VX2|1|2|A|1299
1VX2|1|2|U|1300
1VX2|1|2|A|1301
1VX2|1|2|G|1302
1VX2|1|2|C|1303
1VX2|1|2|U|1304
1VX2|1|2|C|1305
1VX2|1|2|U|1306
1VX2|1|2|U|1307
1VX2|1|2|U|1308
1VX2|1|2|C|1309
1VX2|1|2|U|1310
1VX2|1|2|C|1311
1VX2|1|2|G|1312
1VX2|1|2|A|1313
1VX2|1|2|U|1314
1VX2|1|2|U|1315
1VX2|1|2|C|1316
1VX2|1|2|C|1317

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein eS10

Chain M

Ribosomal protein eS12

Chain P

Ribosomal protein uS19

Chain d

Ribosomal protein uS14

Chain f

Ribosomal protein eS31