Motif HL_40069.1 Version HL_40069.1 of this group appears in releases 3.80 to 3.84

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	1-4
1	HL_6U8D_001	6U8D	0.0000	2	A	JIIIabc RNA (68-MER)	G	161	A	162	G	163	C	166	cWW
2	HL_3ADD_003	3ADD	0.3039	2	C	Selenocysteine transfer RNA	C	47\|\|\|D	G	47\|\|\|E	A	47\|\|\|F	G	47\|\|\|I	cWW
3	HL_8C3A_221	8C3A	0.9359	2	CM	SSU rRNA	C	1344	A	1345	U	1346	G	1349	cWW
4	HL_4V88_187	4V88	0.6174	8	A6	SSU rRNA	C	70	A	71	A	72	G	81	cWW
5	HL_8C3A_193	8C3A	0.7636	8	CM	SSU rRNA	C	70	A	71	A	72	G	81	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAUUUAUACAG	2
GAGUAC	1
CGAGUG	1
CAUUUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAUUUAUACA	2
AGUA	1
GAGU	1
AUUU	1

Release history

Release	3.80	3.81	3.82	3.83	3.84
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-F-F
Heat map statistics: Min 0.23 | Avg 0.45 | Max 0.94

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