Motif HL_40069.1 Version HL_40069.1 of this group appears in releases 3.80 to 3.84
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6U8D_001 | 6U8D | 0.0000 | 2 | A | JIIIabc RNA (68-MER) | G | 161 | A | 162 | G | 163 | C | 166 | cWW | |
| 2 | HL_3ADD_003 | 3ADD | 0.3039 | 2 | C | Selenocysteine transfer RNA | C | 47|||D | G | 47|||E | A | 47|||F | G | 47|||I | cWW | |
| 3 | HL_8C3A_221 | 8C3A | 0.9359 | 2 | CM | SSU rRNA | C | 1344 | A | 1345 | U | 1346 | G | 1349 | cWW | |
| 4 | HL_4V88_187 | 4V88 | 0.6174 | 8 | A6 | SSU rRNA | C | 70 | A | 71 | A | 72 | G | 81 | cWW | |
| 5 | HL_8C3A_193 | 8C3A | 0.7636 | 8 | CM | SSU rRNA | C | 70 | A | 71 | A | 72 | G | 81 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUUUAUACAG | 2 |
| GAGUAC | 1 |
| CGAGUG | 1 |
| CAUUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUUUAUACA | 2 |
| AGUA | 1 |
| GAGU | 1 |
| AUUU | 1 |
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