Motif HL_40407.1 Version HL_40407.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 1-2 | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2Y9H_007 | 2Y9H | 0.3826 | 4 | N | RNA (19-mer) | C | 11 | G | 16 | cWW | |
| 2 | HL_5TBW_022 | 5TBW | 0.0000 | 4 | Externally structured | 1 | LSU rRNA | C | 958 | G | 963 | cWW |
| 3 | HL_6AAX_001 | 6AAX | 0.2876 | 4 | Mini UNCG | B | RNA (28-mer) | U | 933 | A | 938 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCGUG | 1 |
| CCUCAG | 1 |
| UGGAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCGU | 1 |
| CUCA | 1 |
| GGAA | 1 |
- Annotations
-
- (1)
- Externally structured (1)
- Mini UNCG (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.29 | Avg 0.24 | Max 0.43
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