Motif HL_41117.1 Version HL_41117.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 5-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3PYO_023 | 3PYO | 0.2493 | 3 | A | 23S ribosomal RNA | G | 744 | G | 745 | A | 746 | G | 748 | C | 749 | A | 750 | C | 753 | cWW | tSW | cWS |
| 2 | HL_2ZJR_022 | 2ZJR | 0.1927 | 3 | X | LSU rRNA | U | 757 | G | 758 | C | 759 | G | 761 | A | 762 | A | 763 | A | 766 | cWW | tSW | ncWS |
| 3 | HL_2QBG_024 | 2QBG | 0.0000 | 3 | B | 23S rRNA | U | 744 | G | 745 | U | 746 | G | 748 | A | 749 | A | 750 | A | 753 | cWW | tSW | cWS |
| 4 | HL_1S72_024 | 1S72 | 0.1388 | 3 | 0 | LSU rRNA | U | 837 | C | 838 | C | 839 | A | 841 | C | 842 | A | 843 | A | 846 | cWW | tSW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUGCAAAC | 1 |
| UGCUGAAACA | 1 |
| UGUUGAAAAA | 1 |
| UCCUACAAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGCAAA | 1 |
| GCUGAAAC | 1 |
| GUUGAAAA | 1 |
| CCUACAAU | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_41117.1 | Only in the parent motif |
|---|---|---|---|
| HL_03589.1 Compare | HL_1S72_024, HL_3PYO_023 | HL_2QBG_024, HL_2ZJR_022 | |
| HL_97795.1 Compare | HL_2QBG_024, HL_2ZJR_022 | HL_1S72_024, HL_3PYO_023 |
Children motifs
| Child motif | Common motif instances | Only in HL_41117.1 | Only in the child motif |
|---|---|---|---|
| HL_88311.1 Compare | HL_1S72_024, HL_2QBG_024, HL_2ZJR_022 | HL_3PYO_023 | HL_4A1B_021, HL_3V2F_023 |
Coloring options: