Motif HL_88311.1 Version HL_88311.1 of this group appears in releases 0.3 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-6	5-8
1	HL_1S72_024	1S72	0.3740	2	0	LSU rRNA	U	837	C	838	C	839	A	841	C	842	A	843	U	845	A	846	cWW	tSW	cWS
2	HL_4A1B_021	4A1B	0.2485	2	1	26S RRNA	A	901	C	902	G	903	G	905	C	906	A	907	A	909	U	910	cWW	ntSW	ncWS
3	HL_3V2F_023	3V2F	0.0000	2	A	23S Ribosomal RNA	G	744	G	745	A	746	G	748	C	749	A	750	A	752	C	753	cWW	tSW	cWS
4	HL_2ZJR_022	2ZJR	0.2429	2	X	LSU rRNA	U	757	G	758	C	759	G	761	A	762	A	763	C	765	A	766	cWW	tSW	ncWS
5	HL_2QBG_024	2QBG	0.4425	2	B	23S rRNA	U	744	G	745	U	746	G	748	A	749	A	750	A	752	A	753	cWW	tSW	cWS

3D structures

Complete motif including flanking bases

Sequence	Counts
UCCUACAAUA	1
ACGUGCAAAU	1
GGAUGCAAAC	1
UGCUGAAACA	1
UGUUGAAAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCUACAAU	1
CGUGCAAA	1
GAUGCAAA	1
GCUGAAAC	1
GUUGAAAA	1

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8	1.0
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_88311.1	Only in the parent motif
HL_41117.1 Compare	HL_1S72_024, HL_2QBG_024, HL_2ZJR_022	HL_4A1B_021, HL_3V2F_023	HL_3PYO_023

Children motifs

Child motif	Common motif instances	Only in HL_88311.1	Only in the child motif
HL_88311.2 Compare	HL_1S72_024, HL_2QBG_024, HL_4A1B_021, HL_3V2F_023	HL_2ZJR_022	HL_4IOA_022

Annotations: (5)
Basepair signature: cWW-R-tSW-R-R
Heat map statistics: Min 0.24 | Avg 0.29 | Max 0.48

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