Motif HL_42094.2 Version HL_42094.2 of this group appears in releases 1.16 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3WQY_001 | 3WQY | 0.7500 | 2 | C | tRNA | C | 1613 | A | 1614 | G | 1615 | G | 1619 | G | 1620 | A | 1621 | G | 1622 | cWW | ||
| 2 | HL_2AZX_001 | 2AZX | 0.0000 | 2 | C | 72-MER | C | 513 | A | 514 | A | 515 | G | 519 | U | 520 | A | 521 | G | 522 | cWW | cWS | |
| 3 | HL_4MGN_006 | 4MGN | 0.9658 | 2 | D | tRNA-glycine | C | 13 | A | 14 | G | 15 | G | 18 | U | 19 | A | 20 | G | 21 | cWW | ncWS | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCGGGAG | 1 |
| CAAUGGUAG | 1 |
| CAGUGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCGGGA | 1 |
| AAUGGUA | 1 |
| AGUGGUA | 1 |
Release history
| Release | 1.16 | 1.17 | 1.18 |
|---|---|---|---|
| Date | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_42094.2 | Only in the parent motif |
|---|---|---|---|
| HL_42094.1 Compare | HL_2AZX_001, HL_4MGN_006 | HL_3WQY_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWS-R-R-R
- Heat map statistics
- Min 0.75 | Avg 0.64 | Max 1.16
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