Motif HL_42553.1 Version HL_42553.1 of this group appears in releases 0.3 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 3-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2NR0_001 | 2NR0 | 0.0000 | 3 | E | leucyl tRNA | G | 12 | G | 13 | A | 14 | A | 15 | G | 19 | U | 20 | A | 20|||A | G | 21 | A | 22 | C | 23 | cWW | ntSH | cWS | |
| 2 | HL_2NRE_001 | 2NRE | 0.9510 | 3 | F | leucyl tRNA | G | 12 | G | 13 | A | 14 | A | 15 | G | 19 | U | 20 | A | 20|||A | G | 21 | A | 22 | C | 23 | ncWW | ntSH | ncWS | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAUUGGUAGAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAUUGGUAGA | 2 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_42553.1 | Only in the parent motif |
|---|---|---|---|
| HL_06375.1 Compare | HL_2NR0_001, HL_2NRE_001 | HL_2NR0_011, HL_2NQP_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-R-cWS-R-R-R
- Heat map statistics
- Min 0.95 | Avg 0.48 | Max 0.95
Coloring options: