Motif HL_42733.1 Version HL_42733.1 of this group appears in releases 3.12 to 3.25
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_012 | 5J7L | 0.4425 | 1 | GNRA wlth extra near cWW | AA | SSU rRNA | G | 462 | U | 463 | U | 464 | A | 465 | A | 466 | A | 468 | C | 469 | C | 470 | cWW | ||
| 2 | HL_4WF9_039 | 4WF9 | 0.0000 | 1 | GNRA with extra cWW | X | LSU rRNA | A | 1673 | U | 1674 | G | 1675 | A | 1676 | G | 1677 | A | 1679 | U | 1680 | U | 1681 | cWW | cwW | ntSH |
| 3 | HL_4V9F_038 | 4V9F | 0.9051 | 0 | 0 | LSU rRNA | G | 1557 | C | 1558 | A | 1559 | U | 1560 | U | 1561 | C | 1562 | G | 1563 | C | 1564 | cWW | ncWW | ||
| 4 | HL_1QTQ_002 | 1QTQ | 0.9437 | 1 | tRNA anticodon loop with synthetase | B | tRNA | A | 931 | U | 932 | U | 933 | C | 934 | U | 935 | A | 937 | U | 938 | U | 939 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAUACC | 1 |
| AUGAGAAUU | 1 |
| GCAUUCGC | 1 |
| AUUCUGAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUAC | 1 |
| UGAGAAU | 1 |
| CAUUCG | 1 |
| UUCUGAU | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA anticodon loop with synthetase (1)
- (1)
- GNRA with extra cWW (1)
- GNRA wlth extra near cWW (1)
- Basepair signature
- cWW-cWW-tSH-R-R
- Heat map statistics
- Min 0.44 | Avg 0.63 | Max 1.00
Coloring options: