Motif HL_42733.1 Version HL_42733.1 of this group appears in releases 3.12 to 3.25

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7	3-6
1	HL_5J7L_012	5J7L	0.4425	1	GNRA related	AA	SSU rRNA	G	462	U	463	U	464	A	465	A	466	A	468	C	469	C	470	cWW
2	HL_4WF9_039	4WF9	0.0000	1	GNRA with extra cWW	X	LSU rRNA	A	1673	U	1674	G	1675	A	1676	G	1677	A	1679	U	1680	U	1681	cWW	cwW	ntSH
3	HL_4V9F_038	4V9F	0.9051	0		0	LSU rRNA	G	1557	C	1558	A	1559	U	1560	U	1561	C	1562	G	1563	C	1564	cWW	ncWW
4	HL_1QTQ_002	1QTQ	0.9437	1	tRNA anticodon loop	B	tRNA	A	931	U	932	U	933	C	934	U	935	A	937	U	938	U	939	cWW		tSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUAAUACC	1
AUGAGAAUU	1
GCAUUCGC	1
AUUCUGAUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUAAUAC	1
UGAGAAU	1
CAUUCG	1
UUCUGAU	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13
Status	New id, > 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tRNA anticodon loop (1)
(1)
GNRA with extra cWW (1)
GNRA related (1)
Basepair signature: cWW-cWW-tSH-R-R
Heat map statistics: Min 0.44 | Avg 0.63 | Max 1.00

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