Motif HL_43610.1 Version HL_43610.1 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V7M_038 | 4V7M | 0.9867 | 4 | AY | tRNA | C | 12 | A | 13 | A | 14 | G | 15 | A | 20 | A | 21 | G | 22 | cWW | ntSH |
| 2 | HL_4ANG_005 | 4ANG | 0.0000 | 0 | R | RNA (20-mer) | G | 7||A||P_P | G | 8||A||P_P | A | 9||A||P_P | G | 10||A||P_P | A | 13||A||P_P | C | 14||A||P_P | C | 15||A||P_P | ||
| 3 | HL_4ANG_001 | 4ANG | 0.0000 | 0 | R | RNA (20-mer) | G | 7||A||P_1 | G | 8||A||P_1 | A | 9||A||P_1 | G | 10||A||P_1 | A | 13||A||P_1 | C | 14||A||P_1 | C | 15||A||P_1 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGACC | 2 |
| CAAGCGGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGAC | 2 |
| AAGCGGUAA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.99 | Avg 0.44 | Max 0.99
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