Motif HL_43610.4 Version HL_43610.4 of this group appears in releases 3.37 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V7M_038 | 4V7M | 0.9867 | 4 | AY | tRNA | C | 12 | A | 13 | A | 14 | G | 15 | A | 20 | A | 21 | G | 22 | cWW | ntSH |
| 2 | HL_4ANG_005 | 4ANG | 0.0000 | 0 | R | RNA (20-mer) | G | 7||A||P_P | G | 8||A||P_P | A | 9||A||P_P | G | 10||A||P_P | A | 13||A||P_P | C | 14||A||P_P | C | 15||A||P_P | ||
| 3 | HL_4ANG_001 | 4ANG | 0.0000 | 0 | R | RNA (20-mer) | G | 7||A||P_1 | G | 8||A||P_1 | A | 9||A||P_1 | G | 10||A||P_1 | A | 13||A||P_1 | C | 14||A||P_1 | C | 15||A||P_1 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGACC | 2 |
| CAAGCGGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGAC | 2 |
| AAGCGGUAA | 1 |
Release history
| Release | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.99 | Avg 0.44 | Max 0.99
Coloring options: