Hairpin Loop Motif Atlas Release 3.58

#	Motif	Core Nts	Instances
1	HL_43074.15 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match GNRA (255) GNRA variation (12) GNRA with GA tSW pair (4) GNRA related (2)	6	273
2	HL_33239.15 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R History status: Exact match T-loop with 2 stacked bulged bases (97) T-loop with 2 bulged bases not stacked (9)	9	108
3	HL_79299.10 View exemplar Basepair signature: cWW-tSW-R History status: Exact match UNCG (43) UNCG variation (5)	5	51
4	HL_59710.7 View exemplar Basepair signature: cWW-bif-R-R-R-R-R History status: Exact match tRNA anticodon loop (26) Anticodon loop related (6)	9	32
5	HL_93727.4 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: Exact match GNRA wlth tandem sheared (9) GNRA related (5) GNRA with extra cWW (2) Pseudoknot geometry (1)	8	22
6	HL_46142.8 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot geometry (20)	8	20
7	HL_69353.7 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (16)	3	18
8	HL_02361.6 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match GNRA (12) GNRA variation (2)	6	16
9	HL_32512.7 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match Pseudoknot geometry (13)	7	16
10	HL_08002.6 View exemplar Basepair signature: cWW-R-R-tWH-R-R History status: Exact match T-loop with unstacked turn (14)	8	14
11	HL_26055.6 View exemplar Basepair signature: cWW-R-R-R-R History status: Updated, 1 parent Purine riboswitch (6) GNRA-like with tWH (2)	7	14
12	HL_73266.4 View exemplar Basepair signature: cWW-cWW-cSW-R-cSH History status: Exact match tRNA anticodon loop (2)	9	13
13	HL_35978.6 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (10)	11	12
14	HL_86880.5 View exemplar Basepair signature: cWW-R-R History status: Exact match Pseudoknot geometry with 3' bulge (9)	5	12
15	HL_46891.2 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot (2) Anticodon loop related (1)	8	11
16	HL_79272.3 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	11
17	HL_87219.4 View exemplar Basepair signature: cWW-R-tSH-R-R-R-R History status: Exact match	10	11
18	HL_68493.6 View exemplar Basepair signature: cWW-tWH-R-R-R History status: Updated, 1 parent T-loop with 2 stacked bulged bases (6) T-loop with 1 bulged base (2) Other HL (1)	7	10
19	HL_04171.3 View exemplar Basepair signature: cWW-cWW-R-cSS-cSS-R History status: Exact match	10	10
20	HL_53760.3 View exemplar Basepair signature: cWW-bif-R-tSH-R History status: Exact match GNRA with extra near cWW (1) GNRA related (1)	8	10
21	HL_36982.3 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (9)	3	10
22	HL_32617.1 View exemplar Basepair signature: cWW-cSH History status: Exact match tRNA D-loop (8) Other HL (1)	5	9
23	HL_67719.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, > 2 parents Ribsomal LSU H95 (5) Pseudoknot geometry (3) tRNA anticodon loop (1)	6	9
24	HL_01008.4 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	9
25	HL_54035.6 View exemplar Basepair signature: cWW-cWW-R-R-R History status: Exact match T-loop related (5)	8	9
26	HL_67265.4 View exemplar Basepair signature: cWW-R-tHW-R-R-R-R-R History status: Exact match	10	8
27	HL_68304.6 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match GNRA (8)	6	8
28	HL_61092.1 View exemplar Basepair signature: cWW-cWS-R-R-R History status: Exact match tRNA D-loop (8)	7	8
29	HL_16898.3 View exemplar Basepair signature: cWW-tSW-R History status: Exact match UNCG (3) UNCG variation (1)	5	7
30	HL_67216.5 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match GNRA (1)	7	7
31	HL_92681.5 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match GNRA variation (4) Anticodon loop related (1)	7	7
32	HL_98557.5 View exemplar Basepair signature: cWW History status: Exact match	3	7
33	HL_02733.5 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	7
34	HL_31286.3 View exemplar Basepair signature: cWW-tWH-R-R-R-R-R History status: Exact match Anticodon loop related (1)	9	7
35	HL_23481.5 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match GNRA (1)	7	7
36	HL_20743.2 View exemplar Basepair signature: cWW-R-cSS-R-R History status: Exact match	8	7
37	HL_57052.2 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (5)	3	7
38	HL_10751.2 View exemplar Basepair signature: cWW-cWS-R-R-R-R History status: Exact match tRNA D-loop (7)	8	7
39	HL_35894.3 View exemplar Basepair signature: cWW-cSW-R-R History status: Exact match	6	6
40	HL_78457.4 View exemplar Basepair signature: cWW-tWH-R-tSH-R History status: Exact match T-loop related (1)	8	6
41	HL_19870.5 View exemplar Basepair signature: cWW-tSH-tHH-tWW-R-R-R History status: Exact match	11	6
42	HL_17926.5 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (2)	9	6
43	HL_82678.2 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	6
44	HL_56677.5 View exemplar Basepair signature: cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW History status: Exact match	13	6
45	HL_36421.5 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Exact match	9	6
46	HL_15942.5 View exemplar Basepair signature: cWW-R History status: Exact match Externally structured (1)	4	6
47	HL_88225.1 View exemplar Basepair signature: cWW-cWS-R-R History status: Exact match tRNA D-loop (6)	6	6
48	HL_28567.3 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	6
49	HL_05018.6 View exemplar Basepair signature: cWW-cSW-R-R-R-R History status: Updated, 1 parent	8	6
50	HL_22447.1 View exemplar Basepair signature: cWW-R History status: Exact match Mini UNCG (2)	4	6
51	HL_72451.5 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	6
52	HL_69774.3 View exemplar Basepair signature: cWW-tSW-R-R History status: Exact match Fab BL3-6 binding hairpin with tSW (3) Other HL (2)	6	5
53	HL_90642.5 View exemplar Basepair signature: cWW-R-R-tWH-R History status: Exact match	7	5
54	HL_19958.1 View exemplar Basepair signature: cWW-cWW-cWS-R-R History status: Exact match	8	5
55	HL_66171.3 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	5
56	HL_48376.4 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Exact match	9	5
57	HL_39334.5 View exemplar Basepair signature: cWW-tSW-R-R History status: Exact match	7	5
58	HL_43613.4 View exemplar Basepair signature: cWW-tWH-tWH-R History status: Exact match	7	5
59	HL_50622.6 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	5
60	HL_92304.3 View exemplar Basepair signature: cWW-cSW-R-R-tSH-R-R History status: Exact match	10	5
61	HL_05123.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R History status: Exact match Pseudoknot geometry (2)	9	4
62	HL_94651.1 View exemplar Basepair signature: cWW-tSS-R-R-R History status: Exact match	7	4
63	HL_46546.1 View exemplar Basepair signature: cWW-R History status: Exact match Mini UNCG (1)	4	4
64	HL_62869.3 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	4
65	HL_86769.2 View exemplar Basepair signature: cWW-cSS-cSH History status: Exact match	7	4
66	HL_31581.4 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (2)	8	4
67	HL_73793.2 View exemplar Basepair signature: cWW-tWH-tWH-R-R History status: Exact match T-loop related (2) Pseudoknot geometry (1)	8	4
68	HL_06569.2 View exemplar Basepair signature: cWW-tSH-R History status: Exact match	5	4
69	HL_68529.1 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (3)	3	4
70	HL_99402.5 View exemplar Basepair signature: cWW-R-R-cSH-cSH-R-R History status: Exact match Pseudoknot with intercalation (3)	10	4
71	HL_44730.2 View exemplar Basepair signature: cWW-R History status: Exact match tRNA anticodon loop with synthetase (1)	4	4
72	HL_41778.1 View exemplar Basepair signature: cWW-cWS-tSW History status: Exact match	6	4
73	HL_89082.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R History status: Exact match	11	4
74	HL_29487.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match Mini UNCG (4)	6	4
75	HL_49196.3 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	4
76	HL_94386.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	4
77	HL_35491.2 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	3
78	HL_81327.2 View exemplar Basepair signature: cWW-cWS-R History status: Exact match tRNA D-loop (3)	5	3
79	HL_12703.2 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	3
80	HL_72714.2 View exemplar Basepair signature: cWW-cWW-R-R-R-R-cWH-R History status: Exact match	11	3
81	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	12	3
82	HL_17086.2 View exemplar Basepair signature: cWW-cWW-R-tSH-R-tSH-R-R History status: Exact match	13	3
83	HL_78061.2 View exemplar Basepair signature: cWW-R-R-R-tWH-R-R-R History status: Exact match T-loop with 3 stacked bulged bases (3)	10	3
84	HL_42733.4 View exemplar Basepair signature: cWW-cWW-tSH-R-R History status: Exact match tRNA anticodon loop with synthetase (1) GNRA with extra cWW (1) GNRA wlth extra near cWW (1)	8	3
85	HL_38646.3 View exemplar Basepair signature: cWW-R-R-R-R History status: Updated, 1 parent T-loop related (3)	7	3
86	HL_33507.3 View exemplar Basepair signature: cWW-R History status: Exact match	4	3
87	HL_98885.3 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (2)	10	3
88	HL_49873.1 View exemplar Basepair signature: cWW-tSH-cWS-cWS-R History status: Exact match tRNA D-loop (3)	8	3
89	HL_43610.4 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match	7	3
90	HL_99223.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	3
91	HL_23537.2 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R-R History status: Exact match T-loop with unstacked turn (3)	10	3
92	HL_01181.4 View exemplar Basepair signature: cWW-tWH-R-R-R History status: Exact match	7	3
93	HL_96776.3 View exemplar Basepair signature: cWW-cSW-R History status: Exact match UNCG variation (1)	5	3
94	HL_48810.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match tRNA D-loop (2)	7	3
95	HL_50537.2 View exemplar Basepair signature: cWW-bif-R-R-R-R History status: Exact match tRNA anticodon loop with synthetase (2)	8	3
96	HL_75091.3 View exemplar Basepair signature: cWW-R-R-R-cSH-R History status: Exact match	9	3
97	HL_80105.3 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	3
98	HL_91503.3 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	3
99	HL_11805.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	3
100	HL_32458.3 View exemplar Basepair signature: cWW-R-R-R-tWH-R History status: Exact match	9	3
101	HL_37407.2 View exemplar Basepair signature: cWW-R History status: Exact match	4	3
102	HL_94352.4 View exemplar Basepair signature: cWW History status: Exact match	5	3
103	HL_19162.2 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R-R-R History status: Exact match	12	3
104	HL_81205.2 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	3
105	HL_32527.3 View exemplar Basepair signature: cWW-tSH-R History status: Exact match GNRA related (2) GNRA (1)	5	3
106	HL_25466.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (2)	11	2
107	HL_61984.1 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (1)	3	2
108	HL_46465.1 View exemplar Basepair signature: cWW-tSW-cSH-tHH-tWW-cHW-cWH-cHW-cWH-tWW-cWH-cWH-R-cWH-cWH-R History status: Exact match	22	2
109	HL_55511.1 View exemplar Basepair signature: cWW-cWS-R History status: Exact match tRNA D-loop (2)	5	2
110	HL_19398.1 View exemplar Basepair signature: cWW-tSH-cWS-cSH-R History status: Exact match	9	2
111	HL_33172.1 View exemplar Basepair signature: cWW-R-tSW History status: Exact match	5	2
112	HL_62604.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match GNRA (1)	6	2
113	HL_86378.1 View exemplar Basepair signature: cWW-cSH-R-R History status: Exact match	7	2
114	HL_90620.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	11	2
115	HL_08510.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	8	2
116	HL_30596.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
117	HL_56387.1 View exemplar Basepair signature: cWW-cWH-R History status: Exact match	5	2
118	HL_98870.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	11	2
119	HL_00923.1 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match Other HL (1)	7	2
120	HL_69941.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	2
121	HL_86843.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match	7	2
122	HL_06048.1 View exemplar Basepair signature: cWW-R-cSS-cSS-R History status: Exact match	9	2
123	HL_26772.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R-R History status: Exact match	11	2
124	HL_02906.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
125	HL_18218.2 View exemplar Basepair signature: cWW-bif-R-R History status: Exact match	6	2
126	HL_27335.1 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	2
127	HL_49992.1 View exemplar Basepair signature: cWW-cWW-tWH-tWH-R-R History status: Exact match	10	2
128	HL_27359.1 View exemplar Basepair signature: cWW-cWS-R History status: Exact match tRNA D-loop (2)	5	2
129	HL_91287.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	6	2
130	HL_20751.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match		2
131	HL_31583.1 View exemplar Basepair signature: cWW-R-cSH-R History status: New id, 2 parents Pseudoknot geometry (1)	6	2
132	HL_40469.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	2
133	HL_60140.1 View exemplar Basepair signature: cWW-bif-R-R History status: Exact match	6	2
134	HL_70970.1 View exemplar Basepair signature: cWW-R-R History status: Exact match Mini UNCG related (1)	5	2
135	HL_93650.1 View exemplar Basepair signature: cWW-tWH-R-R-R-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	15	2
136	HL_24323.1 View exemplar Basepair signature: cWW-tWW-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	10	2
137	HL_18722.2 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (2)	3	2
138	HL_91434.1 View exemplar Basepair signature: cWW-cSW-cWW-R-R-R History status: Exact match	9	2
139	HL_71540.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match Mini UNCG with extended bulge (1)	7	2
140	HL_15968.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
141	HL_84050.1 View exemplar Basepair signature: cWW-R-cSH History status: Exact match Other HL (2)	6	2
142	HL_24625.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
143	HL_53987.4 View exemplar Basepair signature: cWW-cWS History status: Exact match UNCG related (2)	4	2
144	HL_67052.1 View exemplar Basepair signature: cWW-bif-R-R-R-R History status: Exact match tRNA anticodon loop (1)	8	2
145	HL_88982.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
146	HL_07432.1 View exemplar Basepair signature: cWW-R-R-cWS-cSH-R-R History status: Exact match	11	2
147	HL_80705.1 View exemplar Basepair signature: cWW-tWW-R-R-R History status: Exact match Pseudoknot (2)	7	2
148	HL_91737.1 View exemplar Basepair signature: cWW-tWW-R-R-R History status: New id, 1 parent Purine riboswitch (1)	7	2
149	HL_01472.4 View exemplar Basepair signature: cWW-R-tSW-R History status: Exact match	6	2
150	HL_51033.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	2
151	HL_16845.5 View exemplar Basepair signature: cWW-tHH-R History status: Exact match	5	2
152	HL_76406.3 View exemplar Basepair signature: cWW-cWH-R-R-R-R History status: Exact match	9	2
153	HL_07579.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-R History status: Exact match	14	2
154	HL_12571.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R History status: Exact match tRNA D-loop (2)	13	2
155	HL_86069.1 View exemplar Basepair signature: cWW-cWH-R History status: Exact match	5	2
156	HL_46463.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
157	HL_55046.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
158	HL_77081.1 View exemplar Basepair signature: cWW-cSW-R History status: Exact match UNCG variation (1)	5	1
159	HL_90197.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
160	HL_98248.1 View exemplar Basepair signature: cWW-cSH-tHW-R-R-R History status: Exact match	10	1
161	HL_19239.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match tRNA D-loop (1)	8	1
162	HL_30541.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
163	HL_37846.1 View exemplar Basepair signature: cWW-tWW-R-R-R History status: Exact match Pseudoknot (1)	7	1
164	HL_49213.1 View exemplar Basepair signature: cWW-tSH-tHW-R-R-R-R History status: Exact match	10	1
165	HL_58733.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R History status: Exact match	12	1
166	HL_69677.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
167	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	13	1
168	HL_22515.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
169	HL_42671.1 View exemplar Basepair signature: cWW-R-R-tSS-R-R-R-R History status: Exact match	11	1
170	HL_51284.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
171	HL_94607.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
172	HL_05667.1 View exemplar Basepair signature: cWW History status: Exact match	3	1
173	HL_25660.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	6	1
174	HL_35888.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
175	HL_90257.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry with G-bulge (1)	15	1
176	HL_98252.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	8	1
177	HL_08291.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-R-R-R History status: Exact match	11	1
178	HL_30585.1 View exemplar Basepair signature: cWW-R-R-R-cSS-R-cSW-R-R-R-R-R History status: Exact match	16	1
179	HL_38011.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R History status: Exact match	13	1
180	HL_49223.1 View exemplar Basepair signature: cWW-tHH-R-R-R History status: Exact match	7	1
181	HL_58912.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
182	HL_81820.1 View exemplar Basepair signature: cWW-tSH-tHW-tHW-cSH-F History status: Exact match	11	1
183	HL_02483.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	10	1
184	HL_12710.1 View exemplar Basepair signature: cWW-cSH-cWW-R-R-tSH-R-R-R-R-R History status: Exact match	15	1
185	HL_22576.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
186	HL_52240.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
187	HL_73016.1 View exemplar Basepair signature: cWW-tSW-R History status: Exact match	6	1
188	HL_05692.1 View exemplar Basepair signature: cWW History status: Exact match	3	1
189	HL_17899.1 View exemplar Basepair signature: cWW-R-tSW-R-R History status: Exact match	8	1
190	HL_56089.1 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match	7	1
191	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	19	1
192	HL_38513.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	10	1
193	HL_49638.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent	6	1
194	HL_59297.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
195	HL_69818.1 View exemplar Basepair signature: cWW-tSW-R History status: Exact match	5	1
196	HL_82131.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
197	HL_93221.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R History status: Exact match	13	1
198	HL_12773.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R History status: Exact match	13	1
199	HL_23090.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: Exact match	8	1
200	HL_52657.1 View exemplar Basepair signature: cWW-tSH-tSH-bif-R-R-R-R-R-R-R History status: Exact match	15	1
201	HL_73051.1 View exemplar Basepair signature: cWW-cWW-cWH-cWH History status: Exact match G-quadruplex fragment (1)	8	1
202	HL_95237.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
203	HL_05832.1 View exemplar Basepair signature: cWW-cWW-tSW-R History status: Exact match	7	1
204	HL_26501.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
205	HL_46771.1 View exemplar Basepair signature: cWW-tSS-F-F-F History status: Exact match	7	1
206	HL_78724.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
207	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	11	1
208	HL_30819.1 View exemplar Basepair signature: cWW-cSH-tSS-R-R History status: Exact match Anticodon loop related (1)	8	1
209	HL_49816.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
210	HL_59445.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
211	HL_93229.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	5	1
212	HL_02811.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
213	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
214	HL_23219.1 View exemplar Basepair signature: cWW-tSW-cWH-R-cSH History status: Exact match	6	1
215	HL_43488.1 View exemplar Basepair signature: cWW-L-R-cWW-R-R-R-R History status: Exact match	11	1
216	HL_52853.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match tRNA D-loop (1)	6	1
217	HL_63693.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	8	1
218	HL_73235.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
219	HL_96283.1 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG with extended bulge (1)	3	1
220	HL_17956.1 View exemplar Basepair signature: cWW-tSH-tHS-R-R History status: Exact match	8	1
221	HL_36095.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	1
222	HL_56500.1 View exemplar Basepair signature: cWW-cWW-F-cSH-F-F History status: Exact match	9	1
223	HL_68478.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
224	HL_90961.1 View exemplar Basepair signature: cWW-tSW History status: Exact match	4	1
225	HL_00996.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	5	1
226	HL_09712.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
227	HL_20714.1 View exemplar Basepair signature: cWW-cWW-tWH-R-R-R-R-R History status: Exact match	11	1
228	HL_39228.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
229	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	20	1
230	HL_70505.1 View exemplar Basepair signature: cWW-cWW-tWW-R-R-R-R-R History status: Exact match	11	1
231	HL_82782.1 View exemplar Basepair signature: cWW-R-tSH-tHS-R-R-R-R-R-R-R-R-R-R History status: Exact match	18	1
232	HL_93436.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match T-loop with 2 stacked bulged bases (1)	7	1
233	HL_14725.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R History status: Exact match	9	1
234	HL_33612.1 View exemplar Basepair signature: cWW-cWH-R-R History status: Exact match	6	1
235	HL_53037.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot (1)	8	1
236	HL_96423.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R History status: Exact match	10	1
237	HL_06137.1 View exemplar Basepair signature: cWW-R-cWH-cHW-cHW-cWH-cHW-cWH-R-cWH-cWH-R-cWH-cWH History status: Exact match G-quadruplex (1)	16	1
238	HL_36207.1 View exemplar Basepair signature: cWW-tSW-R-R-R-R History status: Exact match	8	1
239	HL_91131.1 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match tRNA anticodon loop (1)	7	1
240	HL_09892.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	6	1
241	HL_70682.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	8	1
242	HL_82851.1 View exemplar Basepair signature: cWW-bif-tSH-R-R-R History status: Exact match Anticodon loop related (1)	9	1
243	HL_93573.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
244	HL_03427.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
245	HL_14859.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
246	HL_34135.1 View exemplar Basepair signature: cWW-cWW-tSH-R History status: Exact match tRNA anticodon loop with synthetase (1)	7	1
247	HL_53189.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match		1
248	HL_66703.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match	7	1
249	HL_96487.1 View exemplar Basepair signature: cWW-R History status: Exact match tRNA D-loop (1)	4	1
250	HL_18495.1 View exemplar Basepair signature: cWW-cWW-cSH-F-F History status: Exact match	8	1
251	HL_48636.1 View exemplar Basepair signature: cWW-cWH-R History status: Exact match	6	1
252	HL_79472.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, 1 parent Pseudoknot geometry (1)	7	1
253	HL_10536.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: Exact match	10	1
254	HL_50374.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
255	HL_83225.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
256	HL_03603.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	15	1
257	HL_34680.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent	6	1
258	HL_53499.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
259	HL_66902.1 View exemplar Basepair signature: cWW-cWS-R-R-R-R-R History status: Exact match tRNA D-loop (1)	9	1
260	HL_74088.1 View exemplar Basepair signature: cWW-tSW-R-cWH-cHW-cHW-cWH-cHW-cWH-R-cWH-cWH-cWH-cWH-R History status: Exact match G-quadruplex (1)	18	1
261	HL_06645.1 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	1
262	HL_27757.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
263	HL_36552.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
264	HL_57204.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG related (1)	3	1
265	HL_68742.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match tRNA anticodon loop (1)	8	1
266	HL_79564.1 View exemplar Basepair signature: cWW-tSH-cWH-cHW-R-cHW-cWH-cHW-cWH-tSH-cHW-R-cWH-cWH-cHW-cWH-cWH-tSH-R-R History status: Exact match G-quadruplex (1)	22	1
267	HL_01187.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
268	HL_20891.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
269	HL_32255.1 View exemplar Basepair signature: cWW-tWW-F-F-cWW-F-F History status: Exact match		1
270	HL_41285.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
271	HL_60326.1 View exemplar Basepair signature: cWW-cWW-tWH-R-R-R History status: Exact match	9	1
272	HL_83704.1 View exemplar Basepair signature: cWW-R-R-cSS-R History status: Exact match	8	1
273	HL_24454.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
274	HL_34974.1 View exemplar Basepair signature: cWW-tSW-R-R History status: Exact match UNCG variation (1)	6	1
275	HL_44769.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	8	1
276	HL_67044.1 View exemplar Basepair signature: cWW-cWW-R-R-R History status: Exact match	8	1
277	HL_88858.1 View exemplar Basepair signature: cWW-bif-tSW History status: Exact match	6	1
278	HL_96854.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	1
279	HL_07268.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
280	HL_18785.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
281	HL_48962.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
282	HL_58200.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
283	HL_68863.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
284	HL_01253.1 View exemplar Basepair signature: cWW-tSS-R-R History status: Exact match	6	1
285	HL_21000.1 View exemplar Basepair signature: cWW-tSH-tSH-R-R History status: Exact match GNRA wlth tandem sheared (1)	8	1
286	HL_60357.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
287	HL_72066.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R History status: Exact match	8	1
288	HL_94032.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match		1
289	HL_04182.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: Exact match	10	1
290	HL_16419.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
291	HL_35010.1 View exemplar Basepair signature: cWW-tHH-cSH-R-R History status: Exact match	8	1
292	HL_44911.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
293	HL_76360.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
294	HL_97049.1 View exemplar Basepair signature: cWW-cWS-cSH-R History status: Exact match	7	1
295	HL_18808.1 View exemplar Basepair signature: cWW-cWS-R History status: Exact match tRNA D-loop (1)	5	1
296	HL_28843.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry with G-bulge (1)	14	1
297	HL_49194.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
298	HL_58446.1 View exemplar Basepair signature: cWW-R-R-R-R-R-tSW-R-R History status: Exact match	12	1
299	HL_12053.1 View exemplar Basepair signature: cWW-tSH-R History status: Exact match	5	1
300	HL_22443.1 View exemplar Basepair signature: cWW-R-tWH-R-tWH-R-R-R History status: Exact match	11	1
301	HL_41851.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R History status: Exact match	9	1
302	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
303	HL_72419.1 View exemplar Basepair signature: cWW-tSH-tHH-R-R-R-R-R History status: Exact match	11	1
304	HL_85984.1 View exemplar Basepair signature: cWW-L-R-R-L-cWW-cWW-R-R-R History status: Exact match	14	1
305	HL_25183.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
306	HL_35188.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match tRNA D-loop (1)	7	1
307	HL_67205.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
308	HL_97733.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	1
309	HL_37694.1 View exemplar Basepair signature: cWW-cWW-R-tSH-R-R History status: Exact match T-loop related (1)	9	1
310	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	13	1
311	HL_69459.1 View exemplar Basepair signature: cWW History status: Exact match	2	1
312	HL_01925.1 View exemplar Basepair signature: cWW-tSH-cWH-cHW-cHW-cWH-cHW-cWH-tSH-cHW-cWH-cWH-cHW-cWH-cWH-R-R History status: Exact match G-quadruplex (1)	19	1
313	HL_42211.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R History status: Exact match	13	1
314	HL_51090.1 View exemplar Basepair signature: cWW-cWS-R-R History status: Exact match tRNA D-loop (1)	6	1