Motif HL_43656.1 Version HL_43656.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6CZR_083 | 6CZR | 0.6191 | 3 | GNRA | 1a | SSU rRNA | C | 453 | G | 454 | A | 458 | G | 459 | cWW | ntSH |
| 2 | HL_4LFB_012 | 4LFB | 0.5307 | 3 | GNRA | A | SSU rRNA | C | 458 | G | 459 | A | 463 | G | 474 | cWW | tSH |
| 3 | HL_7RQB_043 | 7RQB | 0.7488 | 3 | GNRA (H) | 1A | LSU rRNA | U | 1720 | G | 1721 | A | 1741 | G | 1742 | cWW | |
| 4 | HL_8F4O_004 | 8F4O | 0.4142 | 0 | B | TPP riboswitch (THI element) | G | 66 | A | 67 | G | 72 | C | 73 | cWW | ||
| 5 | HL_5TBW_063 | 5TBW | 0.0000 | 3 | 1 | LSU rRNA | U | 2920 | U | 2921 | C | 2925 | A | 2926 | cWW | ||
| 6 | HL_4WF9_058 | 4WF9 | 0.1824 | 3 | X | LSU rRNA | C | 2578 | U | 2579 | C | 2583 | G | 2584 | cWW | ||
| 7 | HL_7A0S_061 | 7A0S | 0.2150 | 3 | X | LSU rRNA | C | 2530 | U | 2531 | C | 2535 | G | 2536 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACGAG | 2 |
| CUGUUCG | 2 |
| UGAUGAG | 1 |
| GAGC | 1 |
| UUGUUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUUC | 3 |
| GACGA | 2 |
| GAUGA | 1 |
| AG | 1 |
- Annotations
-
- (4)
- GNRA (2)
- GNRA (H) (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.13 | Avg 0.36 | Max 0.75
Coloring options: