RNA 3D Hub //

Motif HL_43656.1 Version HL_43656.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 41-42-3
1 HL_6CZR_0836CZR0.61913GNRA1a SSU rRNAC453G454A458G459cWWntSH
2 HL_4LFB_0124LFB0.53073GNRAA SSU rRNAC458G459A463G474cWWtSH
3 HL_7RQB_0437RQB0.74883GNRA (H)1A LSU rRNAU1720G1721A1741G1742cWW
4 HL_8F4O_0048F4O0.41420BTPP riboswitch (THI element)G66A67G72C73cWW
5 HL_5TBW_0635TBW0.000031 LSU rRNAU2920U2921C2925A2926cWW
6 HL_4WF9_0584WF90.18243X LSU rRNAC2578U2579C2583G2584cWW
7 HL_7A0S_0617A0S0.21503X LSU rRNAC2530U2531C2535G2536cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGACGAG2
CUGUUCG2
UGAUGAG1
GAGC1
UUGUUCA1
Non-Watson-Crick part of the motif
SequenceCounts
UGUUC3
GACGA2
GAUGA1
AG1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • GNRA (2)
  • GNRA (H) (1)
    • Basepair signature
    cWW-F-F
    Heat map statistics
    Min 0.13 | Avg 0.36 | Max 0.75
    Help

    Coloring options:

    HL_6CZR_083:HL_6CZR_083 = 0HL_6CZR_083:HL_4LFB_012 = 0.2196HL_6CZR_083:HL_7RQB_043 = 0.3667HL_6CZR_083:HL_8F4O_004 = 0.3669HL_6CZR_083:HL_5TBW_063 = 0.6191HL_6CZR_083:HL_4WF9_058 = 0.5214HL_6CZR_083:HL_7A0S_061 = 0.5006HL_4LFB_012:HL_6CZR_083 = 0.2196HL_4LFB_012:HL_4LFB_012 = 0HL_4LFB_012:HL_7RQB_043 = 0.3542HL_4LFB_012:HL_8F4O_004 = 0.3227HL_4LFB_012:HL_5TBW_063 = 0.5307HL_4LFB_012:HL_4WF9_058 = 0.4571HL_4LFB_012:HL_7A0S_061 = 0.4403HL_7RQB_043:HL_6CZR_083 = 0.3667HL_7RQB_043:HL_4LFB_012 = 0.3542HL_7RQB_043:HL_7RQB_043 = 0HL_7RQB_043:HL_8F4O_004 = 0.2171HL_7RQB_043:HL_5TBW_063 = 0.7488HL_7RQB_043:HL_4WF9_058 = 0.634HL_7RQB_043:HL_7A0S_061 = 0.6071HL_8F4O_004:HL_6CZR_083 = 0.3669HL_8F4O_004:HL_4LFB_012 = 0.3227HL_8F4O_004:HL_7RQB_043 = 0.2171HL_8F4O_004:HL_8F4O_004 = 0HL_8F4O_004:HL_5TBW_063 = 0.4142HL_8F4O_004:HL_4WF9_058 = 0.4381HL_8F4O_004:HL_7A0S_061 = 0.4477HL_5TBW_063:HL_6CZR_083 = 0.6191HL_5TBW_063:HL_4LFB_012 = 0.5307HL_5TBW_063:HL_7RQB_043 = 0.7488HL_5TBW_063:HL_8F4O_004 = 0.4142HL_5TBW_063:HL_5TBW_063 = 0HL_5TBW_063:HL_4WF9_058 = 0.1824HL_5TBW_063:HL_7A0S_061 = 0.215HL_4WF9_058:HL_6CZR_083 = 0.5214HL_4WF9_058:HL_4LFB_012 = 0.4571HL_4WF9_058:HL_7RQB_043 = 0.634HL_4WF9_058:HL_8F4O_004 = 0.4381HL_4WF9_058:HL_5TBW_063 = 0.1824HL_4WF9_058:HL_4WF9_058 = 0HL_4WF9_058:HL_7A0S_061 = 0.1263HL_7A0S_061:HL_6CZR_083 = 0.5006HL_7A0S_061:HL_4LFB_012 = 0.4403HL_7A0S_061:HL_7RQB_043 = 0.6071HL_7A0S_061:HL_8F4O_004 = 0.4477HL_7A0S_061:HL_5TBW_063 = 0.215HL_7A0S_061:HL_4WF9_058 = 0.1263HL_7A0S_061:HL_7A0S_061 = 0HL_6CZR_083HL_4LFB_012HL_7RQB_043HL_8F4O_004HL_5TBW_063HL_4WF9_058HL_7A0S_061Discrepancy0.000.200.400.60
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