Motif HL_43821.1 Version HL_43821.1 of this group appears in releases 1.18 to 1.18
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-16 | 1-17 | 2-16 | 3-15 | 4-14 | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4W23_018 | 4W23 | 0.0000 | 0 | 2 | U | 885 | A | 886 | U | 887 | U | 888 | U | 889 | U | 890 | G | 891 | U | 892 | U | 893 | G | 894 | G | 895 | U | 896 | U | 897 | U | 898 | U | 899 | C | 900 | G | 901 | ncWW | cWW | ncWW | ||
2 | HL_2ANN_001 | 2ANN | 0.9828 | 0 | B | C | 5 | G | 6 | G | 7 | A | 8 | U | 9 | C | 10 | A | 11 | G | 12 | U | 13 | C | 14 | A | 15 | C | 16 | C | 17 | C | 18 | A | 19 | A | 20 | G | 21 | cWW | tSH | tSH | ncBW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UAUUUUGUUGGUUUUCG | 1 |
CGGAUCAGUCACCCAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUUUUGUUGGUUUUC | 1 |
GGAUCAGUCACCCAA | 1 |
Release history
Release | 1.18 |
---|---|
Date | 2014-10-09 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in HL_43821.1 | Only in the parent motif |
---|---|---|---|
HL_25197.1 Compare | HL_2ANN_001 | HL_4W23_018 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.98 | Avg 0.49 | Max 0.98
Coloring options: