Motif HL_45018.2 Version HL_45018.2 of this group appears in releases 0.3 to 0.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-7 | 4-8 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2D6F_004 | 2D6F | 0.8400 | 2 | F | tRNA | G | 912 | U | 913 | A | 914 | G | 915 | U | 916 | G | 917 | A | 920 | A | 921 | U | 922 | C | 923 | cWW | ncwW | ncWS | ||
| 2 | HL_3IVN_001 | 3IVN | 0.2091 | 1 | A | Purine riboswitch | A | 21 | U | 22 | G | 23 | A | 24 | U | 25 | A | 26 | G | 28 | G | 29 | U | 30 | U | 31 | cWW | cwW | ncSs | ||
| 3 | HL_3LA5_001 | 3LA5 | 0.1162 | 1 | A | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncSs | ||
| 4 | HL_1Y26_001 | 1Y26 | 0.0000 | 1 | X | Purine riboswitch | A | 30 | U | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | U | 40 | cWW | cwW | ncsS | ncSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGAUAUGGUU | 3 |
| GUAGUGGUAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAUAUGGU | 3 |
| UAGUGGUAAU | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 |
|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_45018.2 | Only in the parent motif |
|---|---|---|---|
| HL_45018.1 Compare | HL_1Y26_001, HL_3IVN_001, HL_3LA5_001 | HL_2D6F_004 | |
| HL_83043.1 Compare | HL_2D6F_004 | HL_1Y26_001, HL_3IVN_001, HL_3LA5_001 | HL_3IVN_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_45018.2 | Only in the child motif |
|---|---|---|---|
| HL_45018.3 Compare | HL_1Y26_001, HL_3LA5_001, HL_3IVN_001, HL_2D6F_004 | HL_4ATO_001 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-R-cSS-cSS-R
- Heat map statistics
- Min 0.12 | Avg 0.38 | Max 0.85
Coloring options: