Motif HL_46489.3 Version HL_46489.3 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_051 | 1VW3 | 0.3129 | 0 | A | 21S ribosomal RNA | A | 2737 | G | 2738 | U | 2739 | A | 2740 | G | 2741 | A | 2742 | U | 2743 | A | 2744 | U | 2745 | cWW | tSH |
| 2 | HL_2QBG_062 | 2QBG | 0.2478 | 0 | B | 23S rRNA | A | 2471 | G | 2472 | U | 2473 | U | 2474 | C | 2475 | A | 2476 | U | 2477 | A | 2478 | U | 2479 | cWW | tSH |
| 3 | HL_4A1B_061 | 4A1B | 0.1815 | 0 | 1 | 26S RRNA | A | 2828 | G | 2829 | U | 2830 | U | 2831 | C | 2832 | A | 2833 | U | 2834 | A | 2835 | U | 2836 | cWW | tSH |
| 4 | HL_4NVV_058 | 4NVV | 0.0000 | 0 | A | 23S Ribosomal RNA | C | 2483 | G | 2484 | U | 2485 | C | 2486 | C | 2487 | A | 2488 | C | 2489 | A | 2490 | G | 2491 | cWW | tSH |
| 5 | HL_3U5H_062 | 3U5H | 0.1180 | 0 | 5 | 25S rRNA | C | 2840 | G | 2841 | U | 2842 | U | 2843 | C | 2844 | A | 2845 | U | 2846 | A | 2847 | G | 2848 | cWW | tSH |
| 6 | HL_4IOA_059 | 4IOA | 0.1768 | 0 | X | LSU rRNA | A | 2450 | G | 2451 | U | 2452 | C | 2453 | C | 2454 | A | 2455 | U | 2456 | A | 2457 | U | 2458 | cWW | tSH |
| 7 | HL_1S72_062 | 1S72 | 0.2391 | 0 | 0 | LSU rRNA | A | 2506 | G | 2507 | C | 2508 | A | 2509 | C | 2510 | A | 2511 | U | 2512 | A | 2513 | U | 2514 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUUCAUAU | 2 |
| AGUAGAUAU | 1 |
| CGUCCACAG | 1 |
| CGUUCAUAG | 1 |
| AGUCCAUAU | 1 |
| AGCACAUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCAUA | 3 |
| GUAGAUA | 1 |
| GUCCACA | 1 |
| GUCCAUA | 1 |
| GCACAUA | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_46489.3 | Only in the parent motif |
|---|---|---|---|
| HL_46489.2 Compare | HL_4IOA_059, HL_1S72_062, HL_4A1B_061, HL_3U5H_062, HL_2QBG_062 | HL_1VW3_051, HL_4NVV_058 | HL_3V2F_058 |
Children motifs
| Child motif | Common motif instances | Only in HL_46489.3 | Only in the child motif |
|---|---|---|---|
| HL_46489.4 Compare | HL_1VW3_051, HL_1S72_062, HL_4A1B_061, HL_2QBG_062, HL_4NVV_058, HL_4IOA_059, HL_3U5H_062 | HL_4CUV_062 |
- Annotations
-
- (7)
- Basepair signature
- cWW-tSH-R-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.21 | Max 0.34
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