Motif HL_46891.3 Version HL_46891.3 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-4 | 3-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6UFM_006 | 6UFM | 0.9293 | 0 | Pseudoknot | B | RNA (98-MER) | G | 80 | G | 81 | U | 82 | G | 83 | A | 84 | G | 85 | C | 86 | C | 87 | cWW | ncSH | |||
| 2 | HL_6UFG_003 | 6UFG | 0.8175 | 0 | Pseudoknot | A | RNA (166-MER) | G | 69 | G | 70 | U | 71 | U | 72 | G | 73 | G | 74 | C | 75 | C | 76 | cWW | ncWH | ncSH | ||
| 3 | HL_6UFG_001 | 6UFG | 0.8928 | 0 | A | RNA (166-MER) | G | 13 | C | 14 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW | ntWW | ||||
| 4 | HL_6UFH_001 | 6UFH | 0.9308 | 0 | Anticodon loop related | A | RNA (167-MER) | G | 13 | C | 14 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW | ||||
| 5 | HL_3R4F_002 | 3R4F | 0.4420 | 0 | A | pRNA | A | 51 | U | 52 | G | 53 | G | 54 | U | 55 | U | 56 | G | 57 | U | 58 | cWW | ncWW | ||||
| 6 | HL_4V9F_055 | 4V9F | 0.0000 | 1 | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | |||||
| 7 | HL_7A0S_052 | 7A0S | 0.1557 | 1 | X | LSU rRNA | C | 2227 | U | 2228 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | |||||
| 8 | HL_4WF9_049 | 4WF9 | 0.1749 | 1 | X | LSU rRNA | C | 2275 | U | 2276 | G | 2278 | G | 2279 | G | 2280 | C | 2281 | G | 2282 | G | 2283 | cWW | |||||
| 9 | HL_5TBW_054 | 5TBW | 0.4135 | 1 | 1 | LSU rRNA | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |||||
| 10 | HL_4V84_034 | 4V84 | 0.4713 | 0 | AV | RNA (34-MER) | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 4 |
| GCGAUCAC | 2 |
| GGUGAGCC | 1 |
| GGUUGGCC | 1 |
| AUGGUUGU | 1 |
| UUAGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 4 |
| CGAUCA | 2 |
| GUGAGC | 1 |
| GUUGGC | 1 |
| UGGUUG | 1 |
| UAGGUA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Pseudoknot (2)
- Anticodon loop related (1)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.14 | Avg 0.62 | Max 0.99
Coloring options: