Motif HL_47284.1 Version HL_47284.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4QEI_004 | 4QEI | 0.0000 | 3 | C | tRNA | G | 12||||2_555 | U | 13||||2_555 | A | 14||||2_555 | G | 15||||2_555 | U | 16||||2_555 | A | 21||||2_555 | U | 22||||2_555 | C | 23||||2_555 | cWW | cwW | cWS |
| 2 | HL_4QEI_001 | 4QEI | 0.0000 | 3 | C | tRNA | G | 12 | U | 13 | A | 14 | G | 15 | U | 16 | A | 21 | U | 22 | C | 23 | cWW | cwW | cWS |
| 3 | HL_5E6M_004 | 5E6M | 0.1018 | 3 | E | tRNA | G | 12 | U | 13 | A | 14 | G | 15 | U | 16 | A | 21 | U | 22 | C | 23 | cWW | cwW | cWS |
| 4 | HL_2DU3_001 | 2DU3 | 0.8167 | 3 | D | tRNA | A | 912 | G | 913 | A | 914 | G | 915 | G | 916 | U | 920 | U | 921 | U | 922 | cWW | ntSH | |
| 5 | HL_2DU3_004 | 2DU3 | 0.8167 | 3 | D | tRNA | A | 912||||4_555 | G | 913||||4_555 | A | 914||||4_555 | G | 915||||4_555 | G | 916||||4_555 | U | 920||||4_555 | U | 921||||4_555 | U | 922||||4_555 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAGUGGUAUC | 3 |
| AGAGGGGCUUU | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUGGUAU | 3 |
| GAGGGGCUU | 2 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-cWS-R-R
- Heat map statistics
- Min 0.10 | Avg 0.41 | Max 0.82
Coloring options: