Motif HL_47383.1 Version HL_47383.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_055 | 8C3A | 0.1200 | 2 | 1 | LSU rRNA | C | 2588 | G | 2591 | G | 2592 | G | 2593 | C | 2594 | G | 2595 | G | 2596 | cWW |
| 2 | HL_5TBW_054 | 5TBW | 0.1155 | 2 | 1 | LSU rRNA | C | 2616 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW |
| 3 | HL_4V9F_055 | 4V9F | 0.1318 | 2 | 0 | LSU rRNA | C | 2281 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW |
| 4 | HL_8VTW_052 | 8VTW | 0.1040 | 2 | 1A | LSU rRNA | C | 2248 | OMG | 2251 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW |
| 5 | HL_5J7L_186 | 5J7L | 0.0955 | 2 | DA | LSU rRNA | C | 2248 | OMG | 2251 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW |
| 6 | HL_4WF9_049 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | C | 2275 | G | 2278 | G | 2279 | G | 2280 | C | 2281 | G | 2282 | G | 2283 | cWW |
| 7 | HL_7A0S_052 | 7A0S | 0.1096 | 2 | X | LSU rRNA | C | 2227 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW |
| 8 | HL_4V83_220 | 4V83 | 0.3710 | 1 | CV | domain 3 of PSIC IGR IRES RNA | U | 6161 | A | 6163 | A | 6164 | G | 6165 | U | 6166 | G | 6167 | G | 6168 | ncWW |
| 9 | HL_4V84_034 | 4V84 | 0.4485 | 1 | AV | RNA (34-MER) | U | 6185 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 5 |
| CUG(OMG)GGCGG | 1 |
| CUGGGCGG | 1 |
| UUAAGUGG | 1 |
| UUAGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 5 |
| UG(OMG)GGCG | 2 |
| UAAGUG | 1 |
| UAGGUA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.24 | Max 0.56
Coloring options: