Motif HL_48254.3 Version HL_48254.3 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 5-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4CUV_057 | 4CUV | 0.3569 | 0 | 1 | 25S RRNA | A | 2673 | A | 2674 | C | 2675 | A | 2676 | G | 2677 | A | 2678 | A | 2679 | A | 2680 | U | 2681 | cWW | cWH |
| 2 | HL_3U5H_057 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | A | 2673 | A | 2674 | C | 2675 | A | 2676 | G | 2677 | A | 2678 | A | 2679 | A | 2680 | U | 2681 | cWW | cWH |
| 3 | HL_4A1B_056 | 4A1B | 0.2076 | 0 | 1 | 26S RRNA | A | 2662 | A | 2663 | C | 2664 | G | 2665 | G | 2666 | A | 2667 | A | 2668 | A | 2669 | U | 2670 | cWW | ntHH |
| 4 | HL_1VW3_045 | 1VW3 | 0.3921 | 0 | A | 21S ribosomal RNA | U | 2454 | A | 2455 | A | 2456 | G | 2457 | G | 2458 | A | 2459 | A | 2460 | A | 2461 | A | 2462 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AACAGAAAU | 2 |
| AACGGAAAU | 1 |
| UAAGGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAGAAA | 2 |
| ACGGAAA | 1 |
| AAGGAAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_48254.3 | Only in the parent motif |
|---|---|---|---|
| HL_48254.2 Compare | HL_1VW3_045, HL_4A1B_056, HL_3U5H_057 | HL_4CUV_057 |
Children motifs
| Child motif | Common motif instances | Only in HL_48254.3 | Only in the child motif |
|---|---|---|---|
| HL_48254.4 Compare | HL_1VW3_045, HL_4A1B_056, HL_3U5H_057, HL_4CUV_057 | HL_1VWW_057, HL_1VX6_056 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWH-R-R-R-R
- Heat map statistics
- Min 0.21 | Avg 0.29 | Max 0.53
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