Motif HL_48254.5 Version HL_48254.5 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 5-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_045 | 1VW3 | 0.3921 | 0 | A | U | 2454 | A | 2455 | A | 2456 | G | 2457 | G | 2458 | A | 2459 | A | 2460 | A | 2461 | A | 2462 | cWW | |
| 2 | HL_1VX6_056 | 1VX6 | 0.1626 | 0 | A | A | 3012 | A | 3013 | C | 3014 | A | 3015 | G | 3016 | A | 3017 | A | 3018 | A | 3019 | U | 3020 | cWW | ncWH |
| 3 | HL_3U5H_057 | 3U5H | 0.0000 | 0 | 5 | A | 2673 | A | 2674 | C | 2675 | A | 2676 | G | 2677 | A | 2678 | A | 2679 | A | 2680 | U | 2681 | cWW | cWH |
| 4 | HL_4A1B_056 | 4A1B | 0.2076 | 0 | 1 | A | 2662 | A | 2663 | C | 2664 | G | 2665 | G | 2666 | A | 2667 | A | 2668 | A | 2669 | U | 2670 | cWW | ntHH |
| 5 | HL_4CUV_057 | 4CUV | 0.3569 | 0 | 1 | A | 2673 | A | 2674 | C | 2675 | A | 2676 | G | 2677 | A | 2678 | A | 2679 | A | 2680 | U | 2681 | cWW | cWH |
| 6 | HL_4W21_057 | 4W21 | 0.3813 | 0 | 5 | G | 4250 | A | 4251 | C | 4252 | A | 4253 | G | 4254 | A | 4255 | A | 4256 | A | 4257 | C | 4258 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AACAGAAAU | 3 |
| UAAGGAAAA | 1 |
| AACGGAAAU | 1 |
| GACAGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAGAAA | 4 |
| AAGGAAA | 1 |
| ACGGAAA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_48254.5 | Only in the parent motif |
|---|---|---|---|
| HL_48254.4 Compare | HL_1VX6_056, HL_1VW3_045, HL_4A1B_056, HL_3U5H_057, HL_4CUV_057 | HL_4W21_057 | HL_1VWW_057 |
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWH-R-R-R-R
- Heat map statistics
- Min 0.16 | Avg 0.31 | Max 0.53
Coloring options: