Motif HL_49821.1 Version HL_49821.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2OEU_002 | 2OEU | 0.3997 | 1 | A | Hammerhead Ribozyme | C | 25 | C | 26 | A | 27 | A | 28 | U | 30 | A | 31 | G | 32 | cWW | |
| 2 | HL_5BTP_003 | 5BTP | 0.0000 | 1 | B | RNA (62-MER) | G | 28 | A | 29 | A | 30 | U | 31 | A | 33 | A | 34 | C | 35 | cWW | ncsS |
| 3 | HL_6WZR_001 | 6WZR | 0.0808 | 1 | A | ZMP/ZTP riboswitch | G | 28 | A | 29 | A | 30 | U | 31 | A | 33 | A | 34 | C | 35 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAUUAAC | 2 |
| CCAAAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUUAA | 2 |
| CAAAUA | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.20 | Max 0.41
Coloring options: