Motif HL_50006.3 Version HL_50006.3 of this group appears in releases 3.99 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_195 | 8CRE | 0.4907 | 2 | CM | SSU rRNA | C | 228 | U | 229 | G | 232 | G | 233 | cWW | ntSW |
| 2 | HL_7D81_001 | 7D81 | 0.4472 | 2 | A | nadA RNA | C | 26 | G | 27 | A | 30 | G | 31 | cWW | |
| 3 | HL_5HR7_005 | 5HR7 | 0.0000 | 5 | D | tRNA | C | 31 | C | 32 | C | 36 | G | 39 | cWW | ntSW |
| 4 | HL_5HR6_002 | 5HR6 | 0.0762 | 5 | C | tRNA | C | 31 | C | 32 | C | 36 | G | 39 | cWW | ntSW |
| 5 | HL_3SIU_002 | 3SIU | 0.7765 | 3 | F | U4atac snRNA | C | 40 | G | 41 | U | 44 | G | 46 | cWW | |
| 6 | HL_6WBR_002 | 6WBR | 0.8878 | 3 | B | RNA (94-MER) | C | 56 | U | 57 | G | 60 | G | 62 |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUUUCACG | 2 |
| CUUCGG | 1 |
| CGAAAG | 1 |
| CGCAUAG | 1 |
| CUUCGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUUCAC | 2 |
| UUCG | 1 |
| GAAA | 1 |
| GCAUA | 1 |
| UUCGU | 1 |
Release history
| Release | 3.99 |
|---|---|
| Date | 2025-07-16 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: