Motif HL_50622.1 Version HL_50622.1 of this group appears in releases 3.2 to 3.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11	1-11	2-10	3-9	4-7
1	HL_4UYK_001	4UYK	0.4607	0	R	SRP RNA	G	21	G	22	U	23	U	24	C	25	G	26	G	27	C	28	G	29	U	30	C	31	cWW
2	HL_4WSM_225	4WSM	0.4544	0	3L	tRNA	C	31	C	32	U	33	U	34	G	35	A	36	G	37	G	38	U	39	G	40	G	41	cWW	cSW
3	HL_1Y0Q_008	1Y0Q	0.2815	0	A	Group I catalytic intron	G	224	A	225	G	226	U	227	A	228	A	229	C	230	G	231	A	232	A	233	C	234	cWW	ncwW		ntSHa
4	HL_4V5O_049	4V5O	0.0000	0	BA	SSU rRNA	G	514	U	515	G	516	U	517	A	518	A	519	A	520	U	521	C	522	U	523	C	524	cWW	ncwW
5	HL_4V7M_039	4V7M	0.5535	0	AY	tRNA	G	29	A	30	U	31	U	32	G	33	U	34	G	35	A	36	U	37	U	38	C	39	ncWW	ncWH	ncwW
6	HL_4LFB_030	4LFB	0.7705	1	A	SSU rRNA	G	1356	A	1357	U	1358	C	1359	A	1360	G	1361	C	1361\|\|\|A	C	1362	A	1363	G	1365	C	1366	cWW	cWW	tWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUUCGGCGUC	1
CCUUGAGGUGG	1
GAGUAACGAAC	1
GUGUAAAUCUC	1
GAUUGUGAUUC	1
GAUCAGCCAUGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUCGGCGU	1
CUUGAGGUG	1
AGUAACGAA	1
UGUAAAUCU	1
AUUGUGAUU	1
AUCAGCCAUG	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.2
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-09-26
Status	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-R-R-R-R-R-R-R-R
Heat map statistics: Min 0.28 | Avg 0.52 | Max 0.97

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Coloring options: Nucleotide numbers

Motif HL_50622.1 Version HL_50622.1 of this group appears in releases 3.2 to 3.7 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_50622.1 Version HL_50622.1 of this group appears in releases 3.2 to 3.7

Download

Csv

Json