Motif HL_50622.5 Version HL_50622.5 of this group appears in releases 3.18 to 3.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4UYK_001 | 4UYK | 0.5507 | 0 | R | SRP RNA | G | 21 | G | 22 | U | 23 | U | 24 | C | 25 | G | 26 | G | 27 | C | 28 | G | 29 | U | 30 | C | 31 | cWW | |||
| 2 | HL_4WSM_225 | 4WSM | 0.5263 | 0 | 3L | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | G | 35 | A | 36 | G | 37 | G | 38 | U | 39 | G | 40 | G | 41 | cWW | cSW | ||
| 3 | HL_6GSK_218 | 6GSK | 0.4668 | 0 | 3L | tRNA | C | 30 | C | 31 | U | 32 | U | 33 | G | 34 | G | 35 | U | 36 | A | 37 | A | 38 | G | 39 | G | 40 | cWW | ncSW | ntSH | |
| 4 | HL_6GSK_215 | 6GSK | 0.1825 | 0 | 3K | tRNA | C | 30 | C | 31 | U | 32 | U | 33 | G | 34 | G | 35 | U | 36 | A | 37 | A | 38 | G | 39 | G | 40 | cWW | ncWW | ntSH | |
| 5 | HL_6GSJ_217 | 6GSJ | 0.0000 | 0 | 3K | tRNA | C | 30 | C | 31 | U | 32 | U | 33 | G | 34 | G | 35 | U | 36 | A | 37 | A | 38 | G | 39 | G | 40 | cWW | ncWW | ntSH | |
| 6 | HL_4V7M_039 | 4V7M | 0.6721 | 0 | AY | tRNA | G | 29 | A | 30 | U | 31 | U | 32 | G | 33 | U | 34 | G | 35 | A | 36 | U | 37 | U | 38 | C | 39 | ncWW | ncWH | ncwW | |
| 7 | HL_6CZR_101 | 6CZR | 0.8842 | 1 | 1a | SSU rRNA | G | 1338 | A | 1339 | U | 1340 | C | 1341 | A | 1342 | G | 1343 | C | 1344 | C | 1345 | A | 1346 | G | 1348 | C | 1349 | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUUGGUAAGG | 3 |
| GGUUCGGCGUC | 1 |
| CCUUGAGGUGG | 1 |
| GAUUGUGAUUC | 1 |
| GAUCAGCCAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUGGUAAG | 3 |
| GUUCGGCGU | 1 |
| CUUGAGGUG | 1 |
| AUUGUGAUU | 1 |
| AUCAGCCAUG | 1 |
Release history
| Release | 3.18 |
|---|---|
| Date | 2019-05-03 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-tSH-R-R-R-R-R
- Heat map statistics
- Min 0.18 | Avg 0.57 | Max 0.98
Coloring options: