HL_52079.1

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6
1	HL_1U6B_002	1U6B	0.5269	0	Pseudoknot geometry	B	197-MER	C	70	G	71	C	72	C	73	C	74	G	75	cWW
2	HL_4WF9_061	4WF9	0.1469	0	Ribsomal LSU H95	X	LSU rRNA	U	2728	G	2729	C	2730	C	2731	A	2732	A	2733	cWW
3	HL_5J7L_198	5J7L	0.0991	0	Ribsomal LSU H95	DA	LSU rRNA	U	2701	G	2702	C	2703	C	2704	A	2705	A	2706	cWW
4	HL_7A0S_064	7A0S	0.0000	0	Ribsomal LSU H95	X	LSU rRNA	U	2680	A	2681	C	2682	C	2683	A	2684	A	2685	cWW
5	HL_4V9F_067	4V9F	0.2374	0	Ribsomal LSU H95	0	LSU rRNA	C	2737	G	2738	A	2739	G	2740	A	2741	G	2742	cWW
6	HL_5TBW_066	5TBW	0.2605	0	Ribsomal LSU H95	1	LSU rRNA	U	3068	G	3069	A	3070	U	3071	C	3072	A	3073	cWW
7	HL_6UFM_005	6UFM	0.3235	0	Pseudoknot geometry	B	RNA (98-MER)	G	50	G	51	A	52	A	53	A	54	C	55	cWW
8	HL_4PQV_002	4PQV	0.4182	1	Pseudoknot geometry	A	Flavivirus 3' UTR stem loop IV	C	28	G	29	C	30	C	31	G	32	G	34	cWW
9	HL_7A0S_037	7A0S	0.8709	1		X	LSU rRNA	G	1508	A	1509	A	1510	A	1511	A	1512	C	1514	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGCCAA	2
CGCCCG	1
UACCAA	1
CGAGAG	1
UGAUCA	1
GGAAAC	1
CGCCGAG	1
GAAAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GCCA	2
GCCC	1
ACCA	1
GAGA	1
GAUC	1
GAAA	1
GCCGA	1
AAAAU	1

Release history

Release	3.54	3.55	3.56	3.57
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27
Status	New id, > 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Ribsomal LSU H95 (5)
Pseudoknot geometry (3)
(1)
Basepair signature: cWW-R-R-R
Heat map statistics: Min 0.10 | Avg 0.41 | Max 0.87

Help

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view

reading 214 atoms

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2 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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214 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 41 ms

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Coloring options: Nucleotide numbers

Motif HL_52079.1 Version HL_52079.1 of this group appears in releases 3.54 to 3.57 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_52079.1 Version HL_52079.1 of this group appears in releases 3.54 to 3.57

Download

Csv

Json