Motif HL_52085.1 Version HL_52085.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5XWP_001 | 5XWP | 0.6438 | 6 | C | RNA (59-MER) | C | 9 | A | 10 | A | 11 | A | 17 | G | 19 | cWW |
| 2 | HL_2QUX_002 | 2QUX | 0.5601 | 3 | F | RNA (25-MER) | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW |
| 3 | HL_8C3A_070 | 8C3A | 0.0000 | 3 | 1 | LSU rRNA | C | 3205 | G | 3206 | G | 3207 | A | 3210 | G | 3212 | cWW |
| 4 | HL_5TBW_069 | 5TBW | 0.0676 | 3 | 1 | LSU rRNA | C | 3240 | G | 3241 | G | 3242 | A | 3245 | G | 3247 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAAAGG | 2 |
| CAAAAAUGAAG | 1 |
| GAUAUGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAAG | 2 |
| AAAAAUGAA | 1 |
| AUAUGG | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.37 | Max 0.67
Coloring options: