Motif HL_52319.1 Version HL_52319.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_7MLX_001 | 7MLX | 0.5427 | 2 | R | RNA (65-MER) | G | 11 | U | 12 | A | 15 | G | 16 | C | 17 | C | 18 | C | 19 | G | 20 | U | 21 | C | 22 | cWW | |
2 | HL_3IVK_001 | 3IVK | 0.0000 | 2 | M | class I ligase product | G | 1 | G | 2 | C | 5||A | A | 6 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH |
3 | HL_3HHN_006 | 3HHN | 0.1396 | 2 | E | Class I ligase ribozyme, self-ligation product | G | 1 | G | 2 | C | 5 | A | 6 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGAACACUAUAC | 2 |
GUGCAGCCCGUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAACACUAUA | 2 |
UGCAGCCCGU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-F-F-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.28 | Max 0.58
Coloring options: