Motif HL_52553.1 Version HL_52553.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7JRS_004 | 7JRS | 0.4659 | 1 | A | G | 63 | A | 64 | G | 66 | C | 67 | A | 68 | G | 69 | G | 70 | C | 71 | A | 72 | C | 73 | ncWW | tWW |
| 2 | HL_4PJO_001 | 4PJO | 0.3233 | 1 | 1 | G | 17 | A | 18 | G | 20 | U | 21 | G | 22 | C | 23 | A | 24 | C | 25 | A | 26 | C | 27 | cWW | ntWW |
| 3 | HL_6WZR_002 | 6WZR | 0.2952 | 1 | A | C | 62 | G | 63 | C | 65 | C | 66 | G | 67 | U | 68 | C | 69 | U | 70 | G | 71 | G | 72 | cWW | |
| 4 | HL_5BTP_004 | 5BTP | 0.2408 | 1 | B | C | 62 | G | 63 | C | 65 | C | 66 | G | 67 | U | 68 | C | 69 | U | 70 | G | 71 | G | 72 | cWW | |
| 5 | HL_4XWF_002 | 4XWF | 0.0000 | 1 | A | C | 50 | G | 51 | C | 53 | C | 54 | G | 55 | C | 56 | C | 57 | U | 58 | G | 59 | G | 60 | cWW | |
| 6 | HL_4ZNP_002 | 4ZNP | 0.3642 | 1 | A | C | 58 | G | 59 | A | 60 | C | 62 | G | 63 | C | 64 | C | 65 | U | 66 | G | 67 | G | 68 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACCGUCUGG | 2 |
| GAAGCAGGCAC | 1 |
| GAGGUGCACAC | 1 |
| CGCCCGCCUGG | 1 |
| CGACCGCCUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACCGUCUG | 2 |
| AAGCAGGCA | 1 |
| AGGUGCACA | 1 |
| GCCCGCCUG | 1 |
| GACCGCCUG | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.13 | Avg 0.40 | Max 0.83
Coloring options: