#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9 101-102-9
1 HL_7JRS_0047JRS0.46591ARNA 3D nanocageG63A64G66C67A68G69G70C71A72C73ncWWtWW
2 HL_4PJO_0014PJO0.323311U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4.G17A18G20U21G22C23A24C25A26C27cWWntWW
3 HL_6WZR_0026WZR0.29521AZMP/ZTP riboswitchC62G63C65C66G67U68C69U70G71G72cWW
4 HL_5BTP_0045BTP0.24081BRNA (62-MER)C62G63C65C66G67U68C69U70G71G72cWW
5 HL_4XWF_0024XWF0.00001AZMP/ZTP riboswitchC50G51C53C54G55C56C57U58G59G60cWW
6 HL_4ZNP_0024ZNP0.36421ApfI RiboswitchC58G59A60C62G63C64C65U66G67G68cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGACCGUCUGG2
GAAGCAGGCAC1
GAGGUGCACAC1
CGCCCGCCUGG1
CGACCGCCUGG1
Non-Watson-Crick part of the motif
SequenceCounts
GACCGUCUG2
AAGCAGGCA1
AGGUGCACA1
GCCCGCCUG1
GACCGCCUG1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Basepair signature
    cWW-F-F-F-F-F-F-F-F
    Heat map statistics
    Min 0.13 | Avg 0.40 | Max 0.83
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