Motif HL_53358.1 Version HL_53358.1 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1P6V_002 | 1P6V | 0.0000 | 0 | B | 45-MER | G | 44 | G | 45 | U | 46 | U | 47 | C | 48 | G | 49 | A | 50 | U | 51 | U | 52 | C | 53 | C | 54 | cWW | cWW | ntWW |
| 2 | HL_1VX2_030 | 1VX2 | 0.9336 | 1 | 2 | 18S ribosomal RNA | A | 1614 | U | 1615 | U | 1616 | G | 1617 | C | 1618 | A | 1619 | A | 1620 | U | 1621 | U | 1622 | U | 1624 | U | 1625 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUCGAUUCC | 1 |
| AUUGCAAUUAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCGAUUC | 1 |
| UUGCAAUUAU | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_53358.1 | Only in the parent motif |
|---|---|---|---|
| HL_44485.1 Compare | HL_1P6V_002 | HL_1VX2_030 |
Children motifs
| Child motif | Common motif instances | Only in HL_53358.1 | Only in the child motif |
|---|---|---|---|
| HL_79541.1 Compare | HL_1VX2_030 | HL_1P6V_002 | |
| HL_94212.1 Compare | HL_1P6V_002 | HL_1VX2_030 | HL_1VWW_005 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.93 | Avg 0.47 | Max 0.93
Coloring options: