Motif HL_53504.2 Version HL_53504.2 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-7 | 4-6 | 4-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2A64_005 | 2A64 | 0.8286 | 0 | A | ribonuclease P RNA | G | 288 | G | 289 | A | 290 | A | 291 | A | 292 | U | 293 | G | 294 | A | 295 | A | 296 | C | 297 | cWW | tSH | tHW | |||
| 2 | HL_1NBS_004 | 1NBS | 0.0000 | 2 | B | RNase P class B | C | 96 | G | 97 | A | 98 | G | 100 | C | 102 | A | 103 | U | 104 | A | 105 | A | 106 | G | 107 | cWW | ntSH | ntHW | ntSW | ||
| 3 | HL_5TBW_052 | 5TBW | 0.8465 | 1 | 1 | LSU rRNA | A | 2441 | G | 2442 | A | 2443 | A | 2445 | U | 2501 | A | 2502 | G | 2503 | U | 2504 | U | 2505 | U | 2506 | cWW | ncWB |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAUGAAC | 1 |
| CGAAGUCAUAAG | 1 |
| AGACAUAGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAUGAA | 1 |
| GAAGUCAUAA | 1 |
| GACAUAGUU | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-tSH-F-F-F-F-F
- Heat map statistics
- Min 0.83 | Avg 0.58 | Max 0.92
Coloring options: