Motif HL_54654.1 Version HL_54654.1 of this group appears in releases 3.3 to 3.25
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2Y8Y_001 | 2Y8Y | 0.6755 | 2 | B | C | 11 | C | 13 | G | 14 | G | 16 | cWW | |
| 2 | HL_5TBW_068 | 5TBW | 0.0000 | 0 | 1 | C | 3194 | U | 3195 | U | 3196 | G | 3197 | cWW | |
| 3 | HL_5AH5_007 | 5AH5 | 0.4799 | 1 | Mini UNCG | D | C | 46|||A | U | 46|||B | C | 46|||C | G | 46|||E | cWW |
| 4 | HL_5J7L_176 | 5J7L | 0.5855 | 0 | DA | C | 1728 | U | 1729 | C | 1730 | G | 1731 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCGUG | 1 |
| CUUG | 1 |
| CUCUG | 1 |
| CUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCGU | 1 |
| UU | 1 |
| UCU | 1 |
| UC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Mini UNCG (1)
- Basepair signature
- cWW-R
- Heat map statistics
- Min 0.43 | Avg 0.52 | Max 0.98
Coloring options: