Motif HL_54834.1 Version HL_54834.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1O0C_002 | 1O0C | 0.9194 | 1 | B | A | 931 | U | 932 | U | 933 | C | 934 | U | 935 | A | 937 | U | 938 | U | 939 | cWW | ntSH | ||
| 2 | HL_1S72_049 | 1S72 | 0.9088 | 0 | GNRA related (H) | 0 | C | 1916 | G | 1917 | U | 1918 | A | 1919 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH | |
| 3 | HL_1S72_032 | 1S72 | 0.0000 | 1 | Anticodon loop related (H) | 0 | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUCUGAUU | 1 |
| CGUACAAG | 1 |
| ACUCAUACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCUGAU | 1 |
| GUACAA | 1 |
| CUCAUAC | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_54834.1 | Only in the child motif |
|---|---|---|---|
| HL_53664.1 Compare | HL_1S72_032 | HL_1O0C_002, HL_1S72_049 | HL_1S72_043, HL_1QRS_002 |
| HL_01926.1 Compare | HL_1S72_049 | HL_1O0C_002, HL_1S72_032 | HL_2ZJR_048, HL_2QBG_051, HL_1S72_051, HL_3V2F_047, HL_3U5H_050, HL_4A1B_049 |
- Annotations
-
- (1)
- Anticodon loop related (H) (1)
- GNRA related (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.74 | Avg 0.57 | Max 0.92
Coloring options: