#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 41-4
1 HL_8VTW_0248VTW0.063821A LSU rRNAU826U828A829G831cWW
2 HL_5J7L_1575J7L0.00002DA LSU rRNAU826U828A829G831cWW
3 HL_4WF9_0254WF90.07002X LSU rRNAU871U873A874G876cWW
4 HL_4V9F_0264V9F0.200020 LSU rRNAU919G921A922G924cWW
5 HL_7A0S_0247A0S0.20302X LSU rRNAU839G841A842G844cWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUUAGG3
UCGAAG1
UUGAGG1
Non-Watson-Crick part of the motif
SequenceCounts
UUAG3
CGAA1
UGAG1

Release history

Release3.873.88
Date2024-08-142024-09-11
StatusNew id, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-F-F
    Heat map statistics
    Min 0.06 | Avg 0.22 | Max 0.79
    Help

    Coloring options:

    HL_8VTW_024:HL_8VTW_024 = 0HL_8VTW_024:HL_5J7L_157 = 0.0638HL_8VTW_024:HL_4WF9_025 = 0.075HL_8VTW_024:HL_4V9F_026 = 0.7911HL_8VTW_024:HL_7A0S_024 = 0.7888HL_5J7L_157:HL_8VTW_024 = 0.0638HL_5J7L_157:HL_5J7L_157 = 0HL_5J7L_157:HL_4WF9_025 = 0.07HL_5J7L_157:HL_4V9F_026 = 0.2HL_5J7L_157:HL_7A0S_024 = 0.203HL_4WF9_025:HL_8VTW_024 = 0.075HL_4WF9_025:HL_5J7L_157 = 0.07HL_4WF9_025:HL_4WF9_025 = 0HL_4WF9_025:HL_4V9F_026 = 0.1959HL_4WF9_025:HL_7A0S_024 = 0.2197HL_4V9F_026:HL_8VTW_024 = 0.7911HL_4V9F_026:HL_5J7L_157 = 0.2HL_4V9F_026:HL_4WF9_025 = 0.1959HL_4V9F_026:HL_4V9F_026 = 0HL_4V9F_026:HL_7A0S_024 = 0.2002HL_7A0S_024:HL_8VTW_024 = 0.7888HL_7A0S_024:HL_5J7L_157 = 0.203HL_7A0S_024:HL_4WF9_025 = 0.2197HL_7A0S_024:HL_4V9F_026 = 0.2002HL_7A0S_024:HL_7A0S_024 = 0HL_8VTW_024HL_5J7L_157HL_4WF9_025HL_4V9F_026HL_7A0S_024Discrepancy0.000.200.400.60
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