Motif HL_55684.1 Version HL_55684.1 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4PQV_003 | 4PQV | 0.7647 | 1 | A | Flavivirus 3' UTR stem loop IV | G | 57 | G | 58 | A | 59 | G | 61 | A | 62 | C | 63 | cWW | tSH |
| 2 | HL_1F1T_001 | 1F1T | 0.0000 | 0 | A | MALACHITE GREEN APTAMER RNA | C | 14 | G | 15 | A | 16 | G | 17 | A | 18 | G | 19 | cWW | ntSH |
| 3 | HL_4P8Z_004 | 4P8Z | 0.6788 | 1 | A | Lariat capping ribozyme | C | 127 | U | 128 | C | 129 | U | 131 | A | 132 | G | 133 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGGAC | 1 |
| CGAGAG | 1 |
| CUCUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGGA | 1 |
| GAGA | 1 |
| UCUUA | 1 |
Release history
| Release | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_55684.1 | Only in the parent motif |
|---|---|---|---|
| HL_95756.1 Compare | HL_1F1T_001 | HL_4PQV_003, HL_4P8Z_004 | HL_4KR7_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.68 | Avg 0.52 | Max 0.92
Coloring options: