Motif HL_95756.1 Version HL_95756.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1F1T_001 | 1F1T | 0.0000 | 0 | A | MALACHITE GREEN APTAMER RNA | C | 14 | G | 15 | A | 16 | G | 17 | A | 18 | G | 19 | cWW | ntSH |
| 2 | HL_4KR7_001 | 4KR7 | 0.9420 | 0 | M | RNA (39-MER) | G | 19 | G | 20 | A | 21 | A | 22 | A | 23 | C | 24 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAGAG | 1 |
| GGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGA | 1 |
| GAAA | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_95756.1 | Only in the parent motif |
|---|---|---|---|
| HL_84353.1 Compare | HL_1F1T_001 | HL_4KR7_001 | HL_4FAW_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_95756.1 | Only in the child motif |
|---|---|---|---|
| HL_14536.1 Compare | HL_4KR7_001 | HL_1F1T_001 | |
| HL_55684.1 Compare | HL_1F1T_001 | HL_4KR7_001 | HL_4PQV_003, HL_4P8Z_004 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
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