Motif HL_56131.4 Version HL_56131.4 of this group appears in releases 4.10 to 4.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9I0V_001 | 9I0V | 0.8585 | 0 | C | A SELEX-derived artificial RNA aptamer | C | 16 | C | 17 | A | 18 | G | 19 | cWW | ncSH |
| 2 | HL_9PN5_051 | 9PN5 | 0.7678 | 2 | A1 | LSU rRNA | C | 2568 | A | 2569 | U | 2570 | G | 2573 | cWW | |
| 3 | HL_2PJP_001 | 2PJP | 0.4255 | 0 | B | SECIS RNA | G | 22 | G | 23 | U | 24 | C | 25 | cWW | |
| 4 | HL_4ILM_005 | 4ILM | 0.3608 | 3 | K | RNA (16-mer) | U | 8 | C | 10 | A | 12 | A | 14 | cWW | |
| 5 | HL_4ILL_001 | 4ILL | 0.3048 | 3 | R | RNA (24-mer) | U | 8 | C | 10 | A | 12 | A | 14 | cWW | |
| 6 | HL_1F7U_002 | 1F7U | 0.0000 | 5 | B | tRNA | G | 931 | C | 932 | A | 937 | C | 939 | cWW | |
| 7 | HL_2ZUE_002 | 2ZUE | 0.2577 | 5 | B | tRNA | C | 931 | C | 932 | A | 937 | G | 939 | cWW | |
| 8 | HL_3WQY_004 | 3WQY | 0.6584 | 1 | C | tRNA | U | 1633 | U | 1634 | C | 1636 | G | 1637 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACUAUA | 2 |
| CCAG | 1 |
| CAUUCG | 1 |
| GGUC | 1 |
| GCU(I)CGAAC | 1 |
| CCUCCUAAG | 1 |
| UUGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUAU | 2 |
| CA | 1 |
| AUUC | 1 |
| GU | 1 |
| CU(I)CGAA | 1 |
| CUCCUAA | 1 |
| UGC | 1 |
Coloring options: