Motif HL_56371.1 Version HL_56371.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2W2H_003 | 2W2H | 0.6283 | 5 | R | RNA (21-mer) | G | 8 | A | 9 | U | 10 | C | 12 | G | 17 | U | 18 | C | 19 | cWW | ncWW | ncWW | |
| 2 | HL_2D6F_004 | 2D6F | 0.2125 | 5 | F | tRNA | G | 912 | U | 913 | A | 914 | G | 915 | A | 921 | U | 922 | C | 923 | cWW | ncwW | ncWS | |
| 3 | HL_4QEI_001 | 4QEI | 0.0000 | 4 | C | tRNA | G | 12 | U | 13 | A | 14 | G | 15 | A | 21 | U | 22 | C | 23 | cWW | cwW | cWS | |
| 4 | HL_5E6M_001 | 5E6M | 0.1172 | 4 | C | tRNA | G | 12 | U | 13 | A | 14 | G | 15 | A | 21 | U | 22 | C | 23 | cWW | cwW | cWS | |
| 5 | HL_1F7U_001 | 1F7U | 0.1921 | 5 | B | TRNA(ARG) | C | 912 | C | 913 | A | 914 | A | 915 | A | 921 | C | 922 | G | 923 | cWW | ncWB | cWS | |
| 6 | HL_4V87_252 | 4V87 | 0.6007 | 6 | BB | TRNA-LEU | G | 12 | G | 13 | A | 14 | A | 15 | A | 21 | A | 23 | C | 24 | ncWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAGUGGUAUC | 2 |
| GAUUCUGCGGUC | 1 |
| GUAGUGGUAAUC | 1 |
| CCAAGGCACG | 1 |
| GGAAUUGGUAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUGGUAU | 2 |
| AUUCUGCGGU | 1 |
| UAGUGGUAAU | 1 |
| CAA(H2U)GG(H2U)CAC | 1 |
| GAAUUGGUAGA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.38 | Max 0.71
Coloring options: