Motif HL_56589.1 Version HL_56589.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 7-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1H4S_001 | 1H4S | 0.0000 | 1 | tRNA D-loop | T | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | C | 17|||A | G | 19 | U | 20 | A | 21 | G | 22 | cWW | cSH | |
| 2 | HL_1J1U_001 | 1J1U | 0.3416 | 1 | tRNA D-loop | B | tRNA | C | 513 | A | 514 | G | 515 | C | 516 | C | 517 | U | 518 | G | 520 | U | 521 | A | 522 | G | 523 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCCGGUAG | 1 |
| CAGCCUGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCCGGUA | 1 |
| AGCCUGGUA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (2)
- Basepair signature
- cWW-cWS-cSH-R-R-R-R
- Heat map statistics
- Min 0.34 | Avg 0.17 | Max 0.34
Coloring options: