Motif HL_56589.1 Version HL_56589.1 of this group appears in releases 3.62 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-9	7-8
1	HL_1H4S_001	1H4S	0.0000	1		T	tRNA	C	13	A	14	G	15	C	16	C	17	C	17\|\|\|A	G	19	U	20	A	21	G	22	cWW		cSH
2	HL_1J1U_001	1J1U	0.3416	1	tRNA D-loop	B	tRNA(Tyr)	C	513	A	514	G	515	C	516	C	517	U	518	G	520	U	521	A	522	G	523	cWW	ncWS

3D structures

Complete motif including flanking bases

Sequence	Counts
CAGCCCGGUAG	1
CAGCCUGGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGCCCGGUA	1
AGCCUGGUA	1

Release history

Release	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (1)
tRNA D-loop (1)
Basepair signature: cWW-cWS-cSH-R-R-R-R
Heat map statistics: Min 0.34 | Avg 0.17 | Max 0.34

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