RNA 3D Hub //

Motif HL_56691.2 Version HL_56691.2 of this group appears in releases 3.80 to 3.82

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_5TBW_0395TBW0.88583GNRA related1 LSU rRNAA1760C1761U1765
2 HL_4V88_1984V880.49263A6 SSU rRNAC491A492G496cWW
3 HL_7A0S_0297A0S0.84245X LSU rRNAC1103G1104G1110cWW
4 HL_4LFB_0054LFB0.53712Mini UNCGA SSU rRNAC201U203G216cWW
5 HL_4YAZ_0044YAZ0.41262Mini UNCGRCyclic di-GMP-I riboswitchC56C58G60cWW
6 HL_8C3A_0138C3A0.000031 LSU rRNAU597U598A602cWW
7 HL_4O26_0014O260.34582ETelomerase TRC186C188G190cWW

3D structures

Complete motif including flanking bases
SequenceCounts
ACCUUU1
CAUUCG1
CGUAAUAG1
CUUUG1
CCCUG1
UUUUUA1
CUCGG1
Non-Watson-Crick part of the motif
SequenceCounts
CCUU1
AUUC1
GUAAUA1
UUU1
CCU1
UUUU1
UCG1

Release history

Release3.803.813.82
Date2024-01-312024-02-282024-03-27
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Mini UNCG (2)
  • GNRA related (1)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.22 | Avg 0.50 | Max 0.96
    Help

    Coloring options:

    HL_5TBW_039:HL_5TBW_039 = 0HL_5TBW_039:HL_4V88_198 = 0.478HL_5TBW_039:HL_7A0S_029 = 0.8836HL_5TBW_039:HL_4LFB_005 = 0.5051HL_5TBW_039:HL_4YAZ_004 = 0.417HL_5TBW_039:HL_8C3A_013 = 0.8858HL_5TBW_039:HL_4O26_001 = 0.9426HL_4V88_198:HL_5TBW_039 = 0.478HL_4V88_198:HL_4V88_198 = 0HL_4V88_198:HL_7A0S_029 = 0.2771HL_4V88_198:HL_4LFB_005 = 0.3397HL_4V88_198:HL_4YAZ_004 = 0.3621HL_4V88_198:HL_8C3A_013 = 0.4926HL_4V88_198:HL_4O26_001 = 0.7464HL_7A0S_029:HL_5TBW_039 = 0.8836HL_7A0S_029:HL_4V88_198 = 0.2771HL_7A0S_029:HL_7A0S_029 = 0HL_7A0S_029:HL_4LFB_005 = 0.3254HL_7A0S_029:HL_4YAZ_004 = 0.3018HL_7A0S_029:HL_8C3A_013 = 0.8424HL_7A0S_029:HL_4O26_001 = 0.9588HL_4LFB_005:HL_5TBW_039 = 0.5051HL_4LFB_005:HL_4V88_198 = 0.3397HL_4LFB_005:HL_7A0S_029 = 0.3254HL_4LFB_005:HL_4LFB_005 = 0HL_4LFB_005:HL_4YAZ_004 = 0.2218HL_4LFB_005:HL_8C3A_013 = 0.5371HL_4LFB_005:HL_4O26_001 = 0.9474HL_4YAZ_004:HL_5TBW_039 = 0.417HL_4YAZ_004:HL_4V88_198 = 0.3621HL_4YAZ_004:HL_7A0S_029 = 0.3018HL_4YAZ_004:HL_4LFB_005 = 0.2218HL_4YAZ_004:HL_4YAZ_004 = 0HL_4YAZ_004:HL_8C3A_013 = 0.4126HL_4YAZ_004:HL_4O26_001 = 0.9347HL_8C3A_013:HL_5TBW_039 = 0.8858HL_8C3A_013:HL_4V88_198 = 0.4926HL_8C3A_013:HL_7A0S_029 = 0.8424HL_8C3A_013:HL_4LFB_005 = 0.5371HL_8C3A_013:HL_4YAZ_004 = 0.4126HL_8C3A_013:HL_8C3A_013 = 0HL_8C3A_013:HL_4O26_001 = 0.3458HL_4O26_001:HL_5TBW_039 = 0.9426HL_4O26_001:HL_4V88_198 = 0.7464HL_4O26_001:HL_7A0S_029 = 0.9588HL_4O26_001:HL_4LFB_005 = 0.9474HL_4O26_001:HL_4YAZ_004 = 0.9347HL_4O26_001:HL_8C3A_013 = 0.3458HL_4O26_001:HL_4O26_001 = 0HL_5TBW_039HL_4V88_198HL_7A0S_029HL_4LFB_005HL_4YAZ_004HL_8C3A_013HL_4O26_001Discrepancy0.000.200.400.600.80
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