RNA 3D Hub //

Motif HL_57052.1 Version HL_57052.1 of this group appears in releases 3.2 to 3.11

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_4LFB_0054LFB0.14222Mini UNCGA SSU rRNAC201U203G216cWW
2 HL_6MSF_0026MSF0.09772Mini UNCGSRNA (10-mer)G6||||P_1C8||||P_1C10||||P_1cWW
3 HL_6MSF_0066MSF0.09772SRNA (10-mer)G6||||P_PC8||||P_PC10||||P_P
4 HL_6MSF_0016MSF0.00002Mini UNCGRRNA (14-mer)G6||||P_1C8||||P_1C10||||P_1cWW
5 HL_6MSF_0056MSF0.00002RRNA (14-mer)G6||||P_PC8||||P_PC10||||P_P
6 HL_4YAZ_0044YAZ0.20802Mini UNCGRCyclic di-GMP-I riboswitchC56C58G60cWW
7 HL_4V8P_1024V8P0.24532D1 LSU rRNAC788C790G792cWW
8 HL_4L8H_0014L8H0.44912Mini UNCGRRNA operator hairpinC9A11G13cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUCAC4
CUUUG1
CCCUG1
CUCCG1
CUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
UCA4
UUU1
CCU1
UCC1
UAA1

Release history

Release3.33.43.53.63.73.83.93.103.23.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-09-262018-10-19
StatusExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchNew id, no parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Mini UNCG (5)
  • (3)
    • Basepair signature
    cWW
    Heat map statistics
    Min 0.10 | Avg 0.21 | Max 0.50
    Help

    Coloring options:

    HL_4LFB_005:HL_4LFB_005 = 0HL_4LFB_005:HL_6MSF_002 = 0.15HL_4LFB_005:HL_6MSF_006 = 0.15HL_4LFB_005:HL_6MSF_001 = 0.1422HL_4LFB_005:HL_6MSF_005 = 0.1422HL_4LFB_005:HL_4YAZ_004 = 0.2308HL_4LFB_005:HL_4V8P_102 = 0.2425HL_4LFB_005:HL_4L8H_001 = 0.5047HL_6MSF_002:HL_4LFB_005 = 0.15HL_6MSF_002:HL_6MSF_002 = 0HL_6MSF_002:HL_6MSF_006 = 0HL_6MSF_002:HL_6MSF_001 = 0.0977HL_6MSF_002:HL_6MSF_005 = 0.0977HL_6MSF_002:HL_4YAZ_004 = 0.2637HL_6MSF_002:HL_4V8P_102 = 0.2758HL_6MSF_002:HL_4L8H_001 = 0.5008HL_6MSF_006:HL_4LFB_005 = 0.15HL_6MSF_006:HL_6MSF_002 = 0HL_6MSF_006:HL_6MSF_006 = 0HL_6MSF_006:HL_6MSF_001 = 0.0977HL_6MSF_006:HL_6MSF_005 = 0.0977HL_6MSF_006:HL_4YAZ_004 = 0.2637HL_6MSF_006:HL_4V8P_102 = 0.2758HL_6MSF_006:HL_4L8H_001 = 0.5008HL_6MSF_001:HL_4LFB_005 = 0.1422HL_6MSF_001:HL_6MSF_002 = 0.0977HL_6MSF_001:HL_6MSF_006 = 0.0977HL_6MSF_001:HL_6MSF_001 = 0HL_6MSF_001:HL_6MSF_005 = 0HL_6MSF_001:HL_4YAZ_004 = 0.208HL_6MSF_001:HL_4V8P_102 = 0.2453HL_6MSF_001:HL_4L8H_001 = 0.4491HL_6MSF_005:HL_4LFB_005 = 0.1422HL_6MSF_005:HL_6MSF_002 = 0.0977HL_6MSF_005:HL_6MSF_006 = 0.0977HL_6MSF_005:HL_6MSF_001 = 0HL_6MSF_005:HL_6MSF_005 = 0HL_6MSF_005:HL_4YAZ_004 = 0.208HL_6MSF_005:HL_4V8P_102 = 0.2453HL_6MSF_005:HL_4L8H_001 = 0.4491HL_4YAZ_004:HL_4LFB_005 = 0.2308HL_4YAZ_004:HL_6MSF_002 = 0.2637HL_4YAZ_004:HL_6MSF_006 = 0.2637HL_4YAZ_004:HL_6MSF_001 = 0.208HL_4YAZ_004:HL_6MSF_005 = 0.208HL_4YAZ_004:HL_4YAZ_004 = 0HL_4YAZ_004:HL_4V8P_102 = 0.192HL_4YAZ_004:HL_4L8H_001 = 0.3584HL_4V8P_102:HL_4LFB_005 = 0.2425HL_4V8P_102:HL_6MSF_002 = 0.2758HL_4V8P_102:HL_6MSF_006 = 0.2758HL_4V8P_102:HL_6MSF_001 = 0.2453HL_4V8P_102:HL_6MSF_005 = 0.2453HL_4V8P_102:HL_4YAZ_004 = 0.192HL_4V8P_102:HL_4V8P_102 = 0HL_4V8P_102:HL_4L8H_001 = 0.3347HL_4L8H_001:HL_4LFB_005 = 0.5047HL_4L8H_001:HL_6MSF_002 = 0.5008HL_4L8H_001:HL_6MSF_006 = 0.5008HL_4L8H_001:HL_6MSF_001 = 0.4491HL_4L8H_001:HL_6MSF_005 = 0.4491HL_4L8H_001:HL_4YAZ_004 = 0.3584HL_4L8H_001:HL_4V8P_102 = 0.3347HL_4L8H_001:HL_4L8H_001 = 0HL_4LFB_005HL_6MSF_002HL_6MSF_006HL_6MSF_001HL_6MSF_005HL_4YAZ_004HL_4V8P_102HL_4L8H_001Discrepancy0.000.100.200.300.400.50
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