Motif HL_57052.1 Version HL_57052.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4LFB_005 | 4LFB | 0.1422 | 2 | Mini UNCG | A | SSU rRNA | C | 201 | U | 203 | G | 216 | cWW |
| 2 | HL_6MSF_002 | 6MSF | 0.0977 | 2 | Mini UNCG | S | RNA (10-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
| 3 | HL_6MSF_006 | 6MSF | 0.0977 | 2 | S | RNA (10-mer) | G | 6||||P_P | C | 8||||P_P | C | 10||||P_P | ||
| 4 | HL_6MSF_001 | 6MSF | 0.0000 | 2 | Mini UNCG | R | RNA (14-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
| 5 | HL_6MSF_005 | 6MSF | 0.0000 | 2 | R | RNA (14-mer) | G | 6||||P_P | C | 8||||P_P | C | 10||||P_P | ||
| 6 | HL_4YAZ_004 | 4YAZ | 0.2080 | 2 | Mini UNCG | R | Cyclic di-GMP-I riboswitch | C | 56 | C | 58 | G | 60 | cWW |
| 7 | HL_4V8P_102 | 4V8P | 0.2453 | 2 | D1 | LSU rRNA | C | 788 | C | 790 | G | 792 | cWW | |
| 8 | HL_4L8H_001 | 4L8H | 0.4491 | 2 | Mini UNCG | R | RNA operator hairpin | C | 9 | A | 11 | G | 13 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAC | 4 |
| CUUUG | 1 |
| CCCUG | 1 |
| CUCCG | 1 |
| CUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCA | 4 |
| UUU | 1 |
| CCU | 1 |
| UCC | 1 |
| UAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Mini UNCG (5)
- (3)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.10 | Avg 0.21 | Max 0.50
Coloring options: