Motif HL_57087.1 Version HL_57087.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VWW_045 | 1VWW | 0.3144 | 1 | 5 | 28S ribosomal RNA | G | 3614 | U | 3616 | G | 3617 | C | 3618 | cWW | |
| 2 | HL_1VX6_045 | 1VX6 | 0.2178 | 1 | A | 28S ribosomal RNA | G | 2403 | A | 2405 | A | 2406 | C | 2407 | cWW | |
| 3 | HL_3U5H_045 | 3U5H | 0.0000 | 1 | 5 | 25S rRNA | G | 2110 | U | 2112 | A | 2113 | C | 2114 | cWW | |
| 4 | HL_4CUV_045 | 4CUV | 0.1892 | 1 | 1 | 25S RRNA | G | 2110 | U | 2112 | A | 2113 | C | 2114 | cWW | |
| 5 | HL_4ILL_001 | 4ILL | 0.8569 | 3 | R | RNA (24-mer) | U | 8 | C | 10 | A | 12 | A | 14 | cWW | |
| 6 | HL_4ILL_002 | 4ILL | 0.9223 | 3 | C | RNA (24-mer) | U | 8 | C | 10 | A | 12 | A | 14 | cWW | |
| 7 | HL_2PJP_001 | 2PJP | 0.8792 | 0 | B | SECIS RNA | G | 22 | G | 23 | U | 24 | C | 25 | cWW | |
| 8 | HL_2PLY_002 | 2PLY | 0.8945 | 0 | E | RNA (23-mer) | G | 22 | G | 23 | U | 24 | C | 25 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAC | 2 |
| UACUAUA | 2 |
| GGUC | 2 |
| GGUGC | 1 |
| GAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA | 2 |
| ACUAU | 2 |
| GU | 2 |
| GUG | 1 |
| AAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_57087.1 | Only in the parent motif |
|---|---|---|---|
| HL_57514.2 Compare | HL_2PLY_002, HL_2PJP_001, HL_4ILL_001, HL_4ILL_002 | HL_4CUV_045, HL_3U5H_045, HL_1VWW_045, HL_1VX6_045 | HL_4L8R_001, HL_4ILM_002 |
| HL_74559.2 Compare | HL_4CUV_045, HL_3U5H_045 | HL_2PLY_002, HL_1VX6_045, HL_4ILL_001, HL_4ILL_002, HL_2PJP_001, HL_1VWW_045 | HL_4A1B_044 |
Children motifs
| Child motif | Common motif instances | Only in HL_57087.1 | Only in the child motif |
|---|---|---|---|
| HL_57087.2 Compare | HL_2PLY_002, HL_4CUV_045, HL_4ILL_001, HL_4ILL_002, HL_2PJP_001, HL_3U5H_045, HL_1VX6_045 | HL_1VWW_045 | HL_4W21_045 |
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