Motif HL_57857.1 Version HL_57857.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_029 | 2QBG | 0.0000 | 0 | B | 23S rRNA | G | 978 | A | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW |
| 2 | HL_3PYO_028 | 3PYO | 0.4571 | 0 | A | 23S ribosomal RNA | G | 978 | G | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW |
| 3 | HL_1S72_029 | 1S72 | 0.4954 | 0 | 0 | LSU rRNA | G | 1076 | G | 1077 | A | 1078 | A | 1079 | C | 1080 | A | 1081 | A | 1082 | C | 1083 | cWW |
| 4 | HL_3O58_026 | 3O58 | 0.5140 | 0 | 1 | 25S ribosomal RNA | G | 1148 | G | 1149 | A | 1150 | U | 1151 | G | 1152 | A | 1153 | A | 1154 | C | 1155 | cWW |
| 5 | HL_2ZJR_027 | 2ZJR | 0.6252 | 0 | X | LSU rRNA | G | 989 | A | 990 | A | 991 | A | 992 | C | 993 | A | 994 | A | 995 | C | 996 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAAC | 2 |
| GGAACAAC | 2 |
| GGAUGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACAA | 2 |
| GAACAA | 2 |
| GAUGAA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_57857.1 | Only in the child motif |
|---|---|---|---|
| HL_18082.1 Compare | HL_2QBG_029, HL_2ZJR_027, HL_1S72_029, HL_3PYO_028 | HL_3O58_026 | HL_1S72_046, HL_2ZJR_044, HL_3PYO_044, HL_2QBG_046, HL_3IVK_002, HL_3IVK_007 |
| HL_78191.1 Compare | HL_3O58_026 | HL_2QBG_029, HL_2ZJR_027, HL_1S72_029, HL_3PYO_028 |
Coloring options: