Motif HL_18082.1 Version HL_18082.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_027 | 2ZJR | 0.8394 | 3 | X | LSU rRNA | G | 989 | A | 990 | A | 992 | C | 993 | C | 996 | cWW |
| 2 | HL_2QBG_029 | 2QBG | 0.8402 | 3 | B | 23S rRNA | G | 978 | A | 979 | A | 981 | C | 982 | C | 985 | cWW |
| 3 | HL_3PYO_028 | 3PYO | 0.7921 | 3 | A | 23S ribosomal RNA | G | 978 | G | 979 | A | 981 | C | 982 | C | 985 | cWW |
| 4 | HL_1S72_029 | 1S72 | 0.8084 | 3 | 0 | LSU rRNA | G | 1076 | G | 1077 | A | 1079 | C | 1080 | C | 1083 | cWW |
| 5 | HL_3IVK_002 | 3IVK | 0.3708 | 0 | M | class I ligase product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW |
| 6 | HL_3IVK_007 | 3IVK | 0.3700 | 0 | C | class I ligase product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW |
| 7 | HL_3PYO_044 | 3PYO | 0.1566 | 0 | A | 23S ribosomal RNA | C | 1752 | G | 1753 | C | 1754 | A | 1755 | G | 1756 | cWW |
| 8 | HL_1S72_046 | 1S72 | 0.1409 | 0 | 0 | LSU rRNA | C | 1808 | G | 1809 | C | 1810 | A | 1811 | G | 1812 | cWW |
| 9 | HL_2QBG_046 | 2QBG | 0.0000 | 0 | B | 23S rRNA | C | 1752 | G | 1753 | A | 1754 | A | 1755 | G | 1756 | cWW |
| 10 | HL_2ZJR_044 | 2ZJR | 0.1592 | 0 | X | LSU rRNA | C | 1743 | G | 1744 | C | 1745 | A | 1746 | G | 1747 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAG | 3 |
| CGCAG | 3 |
| GAAACAAC | 2 |
| GGAACAAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA | 3 |
| GCA | 3 |
| AAACAA | 2 |
| GAACAA | 2 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_18082.1 | Only in the parent motif |
|---|---|---|---|
| HL_51648.1 Compare | HL_1S72_046, HL_2ZJR_044, HL_3PYO_044, HL_2QBG_046, HL_3IVK_002, HL_3IVK_007 | HL_2ZJR_027, HL_2QBG_029, HL_1S72_029, HL_3PYO_028 | HL_3PYO_040, HL_2QBG_042, HL_2ZJR_040, HL_3O58_041 |
| HL_57857.1 Compare | HL_2QBG_029, HL_2ZJR_027, HL_1S72_029, HL_3PYO_028 | HL_1S72_046, HL_2ZJR_044, HL_3PYO_044, HL_2QBG_046, HL_3IVK_002, HL_3IVK_007 | HL_3O58_026 |
Children motifs
| Child motif | Common motif instances | Only in HL_18082.1 | Only in the child motif |
|---|---|---|---|
| HL_87136.1 Compare | HL_2ZJR_027, HL_2QBG_029, HL_1S72_029 | HL_1S72_046, HL_2ZJR_044, HL_3PYO_044, HL_2QBG_046, HL_3PYO_028, HL_3IVK_002, HL_3IVK_007 | HL_4A1B_027, HL_3V2F_028, HL_3U5H_026 |
| HL_56824.1 Compare | HL_2ZJR_044, HL_1S72_046, HL_2QBG_046 | HL_2ZJR_027, HL_2QBG_029, HL_3PYO_044, HL_1S72_029, HL_3PYO_028, HL_3IVK_002, HL_3IVK_007 | HL_1S72_042, HL_3V2F_038, HL_3V2F_042, HL_2ZJR_040, HL_2QBG_042, HL_4A1B_040, HL_3U5H_041 |
| HL_26057.1 Compare | HL_3IVK_007 | HL_2ZJR_027, HL_1S72_046, HL_2QBG_029, HL_2ZJR_044, HL_3PYO_044, HL_1S72_029, HL_2QBG_046, HL_3PYO_028, HL_3IVK_002 | HL_2ZNI_001 |
Coloring options: