Motif HL_58083.3 Version HL_58083.3 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4KR2_001 | 4KR2 | 0.8364 | 3 | C | tRNA | G | 12 | U | 13 | A | 14 | G | 15 | U | 16 | A | 21 | U | 22 | C | 23 | cWW | cwW | cWS |
| 2 | HL_2DU3_001 | 2DU3 | 0.0000 | 3 | D | tRNA | A | 912 | G | 913 | A | 914 | G | 915 | G | 916 | U | 920 | U | 921 | U | 922 | cWW | ntSH | |
| 3 | HL_2DU6_001 | 2DU6 | 0.2765 | 3 | D | tRNA | A | 912 | G | 913 | A | 914 | G | 915 | G | 916 | U | 920 | U | 921 | U | 922 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAGGGGCUUU | 2 |
| GUAGUGGUAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGGGGCUU | 2 |
| UAGUGGUAU | 1 |
Release history
| Release | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_58083.3 | Only in the parent motif |
|---|---|---|---|
| HL_58083.2 Compare | HL_2DU3_001, HL_2DU6_001 | HL_4KR2_001 | HL_1U0B_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.45 | Max 0.89
Coloring options: