Motif HL_58083.2 Version HL_58083.2 of this group appears in releases 0.2 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2DU6_001 | 2DU6 | 0.2487 | 2 | D | tRNA | A | 912 | G | 913 | A | 914 | G | 915 | G | 916 | C | 919 | U | 920 | U | 921 | U | 922 | cWW | |
| 2 | HL_2DU3_001 | 2DU3 | 0.0000 | 2 | D | tRNA | A | 912 | G | 913 | A | 914 | G | 915 | G | 916 | C | 919 | U | 920 | U | 921 | U | 922 | cWW | ntSH |
| 3 | HL_1U0B_001 | 1U0B | 0.7343 | 2 | A | tRNA | A | 12 | A | 13 | A | 14 | G | 15 | C | 16 | U | 20 | U | 21 | A | 22 | U | 23 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAGGGGCUUU | 2 |
| AAAGCGGUUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGGGGCUU | 2 |
| AAGCGGUUA | 1 |
Release history
| Release | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-12-08 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_58083.2 | Only in the parent motif |
|---|---|---|---|
| HL_58083.1 Compare | HL_2DU3_001, HL_1U0B_001 | HL_2DU6_001 | HL_2QBG_009 |
| HL_09105.1 Compare | HL_2DU6_001 | HL_2DU3_001, HL_1U0B_001 | HL_2D6F_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_58083.2 | Only in the child motif |
|---|---|---|---|
| HL_58083.3 Compare | HL_2DU3_001, HL_2DU6_001 | HL_1U0B_001 | HL_4KR2_001 |
| HL_84172.1 Compare | HL_1U0B_001 | HL_2DU3_001, HL_2DU6_001 | HL_4A1B_071 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-R-R-R-R-R
- Heat map statistics
- Min 0.25 | Avg 0.39 | Max 0.77
Coloring options: